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[p4-feedback] Protege 4.1 import URI resolution

Samson Tu swt at
Mon Apr 19 12:56:25 PDT 2010


I have a collection of OWL ontologies that load without any problem in 
Protege 4.0x, but when I tried to load it with Protege 4.1, I got "file 
not found error."

I see that the file of an imported ontology study_examples has been 
resolved to "file:/Users/tu/Dropbox/OCRE/trunk/study_examples.owl" which 
is the correct file path for my Mac at home. However, I am using a 
Windows workstation. Where is Protege 4.1 getting the path information, 
and why does Protege 4.0 behaves correctly but Protege 4.1 doesn't?

Thank you.

With best regards,

C:\Program Files\Protege_4.1>java -Dlog4j.configuration=file:log4j.xml 
xpansionLimit=100000000 -Dfile.encoding=utf-8 
-Dorg.protege.plugin.dir=plugins -
classpath bin/felix.jar org.apache.felix.main.Main

Welcome to Felix

Starting Protege 4 OWL Editor (Version 4.1.0, Build = 102)
     Java: JVM 1.6.0_06-b02 Memory: 954M
     Language: en, Country: US
     Framework: Apache Software Foundation (1.5)
     OS: win (5.2)
     Processor: x86-64
Installed plugin Dlquery
Installed plugin Owlviz Plug-in
Installed plugin The Protege 4 OWL Editor
Installed plugin HermiT Reasoner
Installed plugin The OWL API
Using OWL API version
Rebuilding entity indices...
... rebuilt in 16 ms
loading Anonymous-1 from 
Mapping (from automapping): Folder: C:\My Dropbox\OCRE\trunk):
et/OCRe/study_examples.owl -> 
loading <> from 

Samson Tu                                   email: swt at
Senior Research Scientist                   web:
Center for Biomedical Informatics Research  phone: 1-650-725-3391
Stanford University                         fax: 1-650-725-7944

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