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[protege-dev] I'm having problems when I try to debug and run from the IDE

Lorenz B. buehmann at informatik.uni-leipzig.de
Tue Feb 14 22:55:08 PST 2017


Protege is based on OSGi, thus, you have to make the dependencies
available via OSGi as well.

> Hello:
>
> SomehavebeeninterestedinwhatarethemodificationsthatyoudidtotheProtégé
> code's ,tofindpossibleerrorsinthesechanges. However,as
> Ialreadytoldyouinthepreviouspost, theexceptionisthrownintheline
> "framework.start",belongingtothemethod  "start",class
> "Launcher".Thisindicatesthatit islaunchedbeforetheexecutionofmychanges.
>
> Ithink,thattheerrorrelatesto 4dependenciesofmaventhatI
> joinedthe"pom.xml" file,theyare:
>
>         <dependency>
>            <groupId>net.sourceforge.owlapi</groupId>
>            <artifactId>pellet-owlapi-ignazio1977</artifactId>
>            <version>2.4.0-ignazio1977</version>
>         </dependency>
>                 
>         <dependency>
>            <groupId>net.sourceforge.owlapi</groupId>
>            <artifactId>pellet-modularity-ignazio1977</artifactId>
>            <version>2.4.0-ignazio1977</version>
>         </dependency>
>         
>         <dependency>
>            <groupId>com.vividsolutions</groupId>
>            <artifactId>jts</artifactId>
>            <version>1.13</version>
>         </dependency>
>         
>         <dependency>
>             <groupId>commons-lang</groupId>
>             <artifactId>commons-lang</artifactId>
>             <version>2.6</version>
>         </dependency>
>
> What doyou think?
>
>  
>
>  
>
> My apologies, but I'm not familiar with the github repository. For
> this reason, I have shared a copy of my project at the following
> address:
> https://www.dropbox.com/s/ysoqq2vbhedzrmr/Prot%C3%A9g%C3%A9Compiled-and-Modified.rar?dl=0
>
>
> I ask you to help me identify this error that has me stopped.
>
>
>
> I forgot to tell you that this project works under the following
> assumptions:
>
> 1) There is a PostgreSQL database server on the local PC.
> 2) On the server there is a database called "DBGIR". In it the
> "Property Assertion Axiom", belonging to the individuals stored in the
> file owl, are stored.
>
> 3) The password for the server is: jemnmgrec
>
> In the "refill" method of class
> "OWLDataPropertyAssertionAxiomFrameSection" that is in
> "org.protege.editor.owl.ui.frame.individual" (line number 60), the
> constructor of my Ontology class is invoked. The first parameter is
> the directory where the owl file is.
>
> You must make the necessary modifications to make the communication
> between the owl file and the database work properly.
>
> I am attaching an owl file and a database backup for testing.
>
>
>
> Best Regards, Manuel Puebla.
>
>  
>
>
>     
>
> Date: Fri, 10 Feb 2017 16:22:53 +0000
>
> From: Josef Hardi <johardi at stanford.edu <mailto:johardi at stanford.edu>>
>
> To: Developer support for WebProtege and Protege Desktop
>
>                <protege-dev at lists.stanford.edu
> <mailto:protege-dev at lists.stanford.edu>>
>
> Subject: Re: [protege-dev] I'm having problems when I try to debug
>
>                from the IDE
>
> Message-ID: <128B15E1-A611-46F5-9C29-4E59B8BAECF7 at stanford.edu
> <mailto:128B15E1-A611-46F5-9C29-4E59B8BAECF7 at stanford.edu>>
>
> Content-Type: text/plain; charset="utf-8"
>
>
>
> What is your Github address for the project?
>
> Best,
> Josef
>
> On Feb 8, 2017, at 12:37 PM, Manuel Enrique Puebla Martinez
> <mpuebla at uci.cu<mailto:mpuebla at uci.cu>> wrote:
>
> Hello:
> I have no problem, when I make an "mvn clean package" to the original
> Prot?g? code. I managed to execute and debug without any problem,
> because of that I was able to learn how Prot?g? works. The problem
> occurs when I add my class and enumerative package. It compiles well,
> but when I try to execute or debug, the error already commented
> appears. If you consider it, I can send you my project with the
> changes made to the source code of Prot?g?, there are not many so far.
> I just modified the "refill" method of the
> "OWLDataPropertyAssertionAxiomFrameSection" class that is in
> "Org.protege.editor.owl.ui.frame.individual", in order to extract the
> "Property assertions" from my ontology that are in a Databases and not
> in the OWL file.
>
>  Attached file "protect.log".
>  I am incorporating functionalities into the Prot?g? project. But I'm
> having problems when I try to debug from the IDE Eclipse.
>  I added a package called "org.protege.editor.owl.bigontology", inside
> I added my classes and enumerative types. Everything compiles well
> when I do an "mvn clean package", I attach an image of the result in
> the console. However, when I try to debug from Eclipse, I get an error
> message: "An error occurred that prevent Prot?g? from Starting", also
> attached the image. "
>  I have been reviewing the code and detected that the exception is
> thrown in the line "framework.start ();", belonging to the method
> "start", class "Launcher".
>
> Within the "start" method, the error occurs when the following line of
> code is executed:
> "// Send a framework event to indicate the framework has started.
>          FireFrameworkEvent (FrameworkEvent.STARTED, this, null); "
>
> Within the "fireFrameworkEvent" method, only the following line of
> code is executed:
> "M_dispatcher.fireFrameworkEvent (new FrameworkEvent (type, bundle,
> throwable));"
>
> "Type" = 1, "bundle" is an information object and "throwable" = null;
>
> Any help that allows me to identify the reason for the error?
>
>
> Best regards.
>
>
> ------------------------------------------------------------------------
> La @universidad_uci es Fidel. Los jóvenes no fallaremos.
> #HastaSiempreComandante #HastalaVictoriaSiempre
>
>
>
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-- 
Lorenz Bühmann
AKSW group, University of Leipzig
Group: http://aksw.org - semantic web research center

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