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[protege-discussion] Missing files in UMLS Tab Source Package

Daniel Holbert holbert at helix.stanford.edu
Thu Sep 7 13:54:36 PDT 2006


I grabbed the RemoteKBTab sources, and that fixed it. Thanks!
~Daniel

Jennifer Vendetti wrote:
> Hello Daniel,
> 
> The UMLS tab is dependent on the "RemoteKB tab":
> 
> Wiki page: 
> http://protege.stanford.edu/plugins/remotekbtab/remote_kb_tab.htm
> Source code:
> http://smi-protege.stanford.edu/repos/protege/remotekb-tab/trunk/
> 
> If you don't want to checkout and compile the source code for the
> RemoteKB tab, you can just download the JAR file (remotekb-tab.jar) from
> the Subversion repository and put it on your classpath:
> 
> http://smi-protege.stanford.edu/repos/protege/_binaries/remotekb-tab-bin-3.2.zip 
> 
> 
> Alternatively, if you have Protege installed somewhere on your machine,
> you can grab the JAR file from the following directory:
> 
> <protege-install-dir>/plugins/edu.stanford.smi.protegex.umls_tab/remotekb-tab.jar 
> 
> 
> In general, we only put dependent JAR files in the /trunk/lib/ directory
> for a project if the JARs are third-party libraries that are not created
> and maintained from within the Protege project, e.g., the owl trunk is
> dependent on the protege trunk but we don't store the protege.jar file
> in the owl/trunk/lib directory.
> 
> Jennifer
> 
> Daniel Holbert wrote:
>  > I downloaded the sources for Protege's UMLS tab from
>  > http://protege.stanford.edu/plugins/umlstab/
>  > but it appears that some source files are missing, and as a result, it
>  > won't compile.
>  >
>  > In particular, the following are some Java classes that are referenced
>  > but don't exist anywhere in the source zipfile (as far as I can see),
>  > causing compiler errors
>  > - RemoteKBTab
>  > - TreeRelationDisplay
>  > - RelationDisplay
>  > - The entire contents of the edu.stanford.smi.RemoteKBTab.toolbox
>  > package (e.g. edu.stanford.smi.RemoteKBTab.toolbox.ListRelationDisplay)
>  >
>  > The binary jar distribution of the UMLS tab has .class files for all of
>  > the above classes, so I'm guessing that the .java files exist but just
>  > got left out of the source zipfile.  Can this be fixed, if possible?
>  >
>  > I might also just be missing something -- let me know if that's the
>  > case.  I do have the jdom and kss-api libraries (which are required for
>  > the tab), so those aren't the source of the issue.
>  >
>  > Thanks,
>  > Daniel Holbert
>  > PharmGKB
>  > Stanford University
>  >
>  > _______________________________________________
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>  > protege-discussion at lists.stanford.edu
>  > https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>  >  
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