Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[protege-discussion] [POSSIBLE VIRUS:###] Re: Problem: save big owl file as project

Yi Sun yisunmu at gmail.com
Thu Feb 1 10:26:13 PST 2007


Hi, Tania,

I have already increased the heap size, problem still exists.
I am attaching my owl file, meantime I will also send this question to OWL
mailing list.

I really appreciate it for your help and time!

Regards
Yi

On 1/31/07, Tania Tudorache <tudorache at stanford.edu> wrote:
>
> Yi,
>
> Please ask OWL related questions on the OWL mailing list.
>
> The OWL file you are talking about does not seem big.
>
> Did you try to increase the heap size? We have instructions on the wiki
> how to do that:
>
> http://protege.cim3.net/cgi-bin/wiki.pl?ScalabilityAndTuning
>
> If after increasing the heap size, you still get errors, please send me
> directly the OWL file, so that I can debug this error.
>
> Thanks,
> Tania
>
>
> Yi Sun wrote:
> > Hi,
> >
> > We have taken the OWL Gene Ontology intensional ontology and
> > translated it into an OWL
> > extensional ontology using a simplified version of the WordNet
> > intensional ontology, i.e., we
> > want to think of the GO ontology as a word/concept vocabulary as
> > WordNet is structured.
> >
> > The OWL file loads into Protege fine and everything seemed to work
> > fine (all classes,
> > instances and properties) but when we clicked "save project", it ran
> > for sometime and then
> > returned error messages. Since the messages were so long, we couldn't
> > read the error message, only
> > the exception stacks occupying the entire screen.
> >
> > The OWL file that we are using is really big, around 10MB, could it be
> > possible Protégé has some
> > problem with big owl file?
> >
> > Since every time we have to terminate the application, there won't be
> > any log message recorded, we still don't
> > know the exact error message. Is there a way to handle this problem
> > and let us see the error
> > messages?  Or do you know what might be causing  this problem?
> >
> > Thank you very much for any help!
> >
> > Sincerely,
> > Yi
> > ------------------------------------------------------------------------
> >
> > _______________________________________________
> > protege-discussion mailing list
> > protege-discussion at lists.stanford.edu
> > https://mailman.stanford.edu/mailman/listinfo/protege-discussion
> >
> > Instructions for unsubscribing:
> http://protege.stanford.edu/doc/faq.html#01a.03
> >
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
> Instructions for unsubscribing:
> http://protege.stanford.edu/doc/faq.html#01a.03
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20070201/c07c857d/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: GOwithAnnotation.zip
Type: application/zip
Size: 928210 bytes
Desc: not available
URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20070201/c07c857d/attachment.zip>


More information about the protege-discussion mailing list