[protege-discussion] Protege UNDO error

[Micheal Hewett]

This is with an OWL ontology but it looks like the error is in the
Protege core so I'll post it here:

What I did:
 1) Load the BirnLex OWL URL as described in William Bug's
    last "DISPLAY_SLOT" email of 3/16, 12:33 am.
 2) Make rdfs:label the display slot for owl:class as described
    on the Wiki page mentioned in the email
 3) Select OWL Classes tab
 4) Open core:Collection
 5) click on core:OrderedCollection
 6) click on line 2 in "Asserted Conditions"
 7) right-click on line 2 and select "Negate condition"
 8) Select Undo from the Edit menu

Mike Hewett


cwd: C:\Program Files\Protege_3.2_full\
cmd: "C:\Program Files\Java\jdk1.5.0_09\bin\java.exe" -Xms300000000 
-Xmx600000000 -Xdebug -classpath
 "C:\Program Files\Protege_3.2_full\protege.jar;C:\Program 
Files\Protege_3.2_full\looks.jar;C:\Progr
am Files\Protege_3.2_full\unicode_panel.jar;C:\Program 
Files\Protege_3.2_full\driver.jar;C:\Program
Files\Protege_3.2_full\driver0.jar;C:\Program 
Files\Protege_3.2_full\driver1.jar;C:\Program Files\Pr
otege_3.2_full\driver2.jar;C:\Program 
Files\Protege_3.2_full\lax.jar;C:\Program Files\Protege_3.2_fu
ll\ocrs12.jar;C:\Program Files\Protege_3.2_full\ojdbc14.jar;C:\Program 
Files\Protege_3.2_full\ojdbc1
4dms.jar;C:\Program 
Files\Protege_3.2_full\orai18n-mapping.jar;C:\Program 
Files\Protege_3.2_full\ora
i18n-utility.jar;C:\Program 
Files\Protege_3.2_full\orai18n.jar;C:\Program Files\Protege_3.2_full\api
s\search\search-api.jar;" com.zerog.lax.LAX "C:/Program 
Files/Protege_3.2_full/Protege.lax" "C:/Docu
ments and Settings/mhewett/Local Settings/Temp/laxA0.tmp"
CONFIG: Protege 3.2 Build 355, JVM 1.5.0_09-b01, memory=597M, Windows 
XP, encoding=UTF-8, language=e
n, country=US

Protege Wizards v1.0 beta build 14
Loaded OWL wizards library
INFO: Loading triples
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.2/BIRNLex-Investigation.owl
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.2/BIRNLex-OrganismalAnatomy.owl
INFO: Loaded 5000 triples
INFO: [ProtegeOWLParser] Triple 10000
INFO: Loaded 10000 triples
INFO: Loaded 15000 triples
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.1/BIRNLex_annotation_properties.ow
l
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.1/OBO_annotation_properties.owl
INFO: [ProtegeOWLParser] Importing 
http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl
INFO: [ProtegeOWLParser] Importing 
http://www.w3.org/2004/02/skos/core/owl-dl/skos-core-owl-dl.owl (
from http://www.w3.org/2004/02/skos/core/owl-dl/skos-core-owl-dl.owl 
[actual ontology at this locati
on: http://www.w3.org/2004/02/skos/core])
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.1/BIRNLex-OBO-UBO.owl
INFO: [ProtegeOWLParser] Importing http://www.ifomis.org/bfo/1.0
INFO: [ProtegeOWLParser] Importing http://www.ifomis.org/obo/ro/1.0/light
INFO: [ProtegeOWLParser] Importing 
http://obi.sourceforge.net/ontology/OBI.owl
INFO: [ProtegeOWLParser] Importing 
http://protege.stanford.edu/plugins/owl/protege (from C:\Program
Files\Protege_3.2_full\plugins\edu.stanford.smi.protegex.owl\protege.owl)
INFO: [ProtegeOWLParser] Importing 
http://www.nbirn.net/birnlex/1.2/BIRNLex-CogBehavior.owl
INFO: [ProtegeOWLParser] Completed triple loading after 39813 ms
INFO: [TripleChangePostProcessor] Completed lists after 0 ms
INFO: [TripleChangePostProcessor] Completed anonymous classes after 63 ms
INFO: [TripleChangePostProcessor] Completed deprecated classes after 109 ms
INFO: [TripleChangePostProcessor] Completed properties after 313 ms
INFO: [TripleChangePostProcessor] Completed named classes after 203 ms
INFO: ... Loading completed after 41954 ms
WARNING: Child node not found: Cls(owl:Class, FrameID(0:9004 0)) -- 
ComponentUtilities.getTreePath()

WARNING: Child node not found: Cls(owl:Class, FrameID(0:9004 0)) -- 
ComponentUtilities.getTreePath()

Exception in thread "AWT-EventQueue-0" 
java.lang.IllegalArgumentException: @_:A271 not unique: Cls(<
<deleted>>, FrameID(24:17506 1))
        at 
edu.stanford.smi.protege.model.framestore.SimpleFrameStore.uniqueName(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.SimpleFrameStore.addCls(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.SimpleFrameStore.createCls(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore.createCls(Unknown 
Sour
ce)
        at 
edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore.createCls(Unknown 
Sourc
e)
        at 
edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand.undoIt(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.undo.MacroCommand.undoIt(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.undo.MacroCommand.undoIt(Unknown 
Source)
        at 
edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore.undo(Unknown 
Source)
        at 
edu.stanford.smi.protege.action.UndoAction.actionPerformed(Unknown Source)
        at 
javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1849)
        at 
javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2169)
        at 
javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420)
        at 
javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258)
        at javax.swing.AbstractButton.doClick(AbstractButton.java:302)
        at 
javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1000)
        at 
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:1041)
        at java.awt.Component.processMouseEvent(Component.java:5488)
        at javax.swing.JComponent.processMouseEvent(JComponent.java:3126)
        at java.awt.Component.processEvent(Component.java:5253)
        at java.awt.Container.processEvent(Container.java:1966)
        at java.awt.Component.dispatchEventImpl(Component.java:3955)
        at java.awt.Container.dispatchEventImpl(Container.java:2024)
        at java.awt.Component.dispatchEvent(Component.java:3803)
        at 
java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212)
        at 
java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892)
        at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822)
        at java.awt.Container.dispatchEventImpl(Container.java:2010)
        at java.awt.Window.dispatchEventImpl(Window.java:1778)
        at java.awt.Component.dispatchEvent(Component.java:3803)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
        at 
java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:242)
        at 
java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163)
        at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157)
        at 
java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)