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[protege-discussion] Protege UNDO error

Tania Tudorache tudorache at stanford.edu
Fri Mar 16 15:26:06 PDT 2007


Hi Mike,

Thanks for the bug report. I have added it to Bugzilla:

http://smi-protege.stanford.edu/bugzilla/show_bug.cgi?id=404

Tania


Micheal Hewett wrote:
> This is with an OWL ontology but it looks like the error is in the
> Protege core so I'll post it here:
>
> What I did:
>  1) Load the BirnLex OWL URL as described in William Bug's
>     last "DISPLAY_SLOT" email of 3/16, 12:33 am.
>  2) Make rdfs:label the display slot for owl:class as described
>     on the Wiki page mentioned in the email
>  3) Select OWL Classes tab
>  4) Open core:Collection
>  5) click on core:OrderedCollection
>  6) click on line 2 in "Asserted Conditions"
>  7) right-click on line 2 and select "Negate condition"
>  8) Select Undo from the Edit menu
>
> Mike Hewett
>
>
> cwd: C:\Program Files\Protege_3.2_full\
> cmd: "C:\Program Files\Java\jdk1.5.0_09\bin\java.exe" -Xms300000000 
> -Xmx600000000 -Xdebug -classpath
>  "C:\Program Files\Protege_3.2_full\protege.jar;C:\Program 
> Files\Protege_3.2_full\looks.jar;C:\Progr
> am Files\Protege_3.2_full\unicode_panel.jar;C:\Program 
> Files\Protege_3.2_full\driver.jar;C:\Program
> Files\Protege_3.2_full\driver0.jar;C:\Program 
> Files\Protege_3.2_full\driver1.jar;C:\Program Files\Pr
> otege_3.2_full\driver2.jar;C:\Program 
> Files\Protege_3.2_full\lax.jar;C:\Program Files\Protege_3.2_fu
> ll\ocrs12.jar;C:\Program Files\Protege_3.2_full\ojdbc14.jar;C:\Program 
> Files\Protege_3.2_full\ojdbc1
> 4dms.jar;C:\Program 
> Files\Protege_3.2_full\orai18n-mapping.jar;C:\Program 
> Files\Protege_3.2_full\ora
> i18n-utility.jar;C:\Program 
> Files\Protege_3.2_full\orai18n.jar;C:\Program Files\Protege_3.2_full\api
> s\search\search-api.jar;" com.zerog.lax.LAX "C:/Program 
> Files/Protege_3.2_full/Protege.lax" "C:/Docu
> ments and Settings/mhewett/Local Settings/Temp/laxA0.tmp"
> CONFIG: Protege 3.2 Build 355, JVM 1.5.0_09-b01, memory=597M, Windows 
> XP, encoding=UTF-8, language=e
> n, country=US
>
> Protege Wizards v1.0 beta build 14
> Loaded OWL wizards library
> INFO: Loading triples
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.2/BIRNLex-Investigation.owl
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.2/BIRNLex-OrganismalAnatomy.owl
> INFO: Loaded 5000 triples
> INFO: [ProtegeOWLParser] Triple 10000
> INFO: Loaded 10000 triples
> INFO: Loaded 15000 triples
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.1/BIRNLex_annotation_properties.ow
> l
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.1/OBO_annotation_properties.owl
> INFO: [ProtegeOWLParser] Importing 
> http://protege.stanford.edu/plugins/owl/dc/protege-dc.owl
> INFO: [ProtegeOWLParser] Importing 
> http://www.w3.org/2004/02/skos/core/owl-dl/skos-core-owl-dl.owl (
> from http://www.w3.org/2004/02/skos/core/owl-dl/skos-core-owl-dl.owl 
> [actual ontology at this locati
> on: http://www.w3.org/2004/02/skos/core])
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.1/BIRNLex-OBO-UBO.owl
> INFO: [ProtegeOWLParser] Importing http://www.ifomis.org/bfo/1.0
> INFO: [ProtegeOWLParser] Importing http://www.ifomis.org/obo/ro/1.0/light
> INFO: [ProtegeOWLParser] Importing 
> http://obi.sourceforge.net/ontology/OBI.owl
> INFO: [ProtegeOWLParser] Importing 
> http://protege.stanford.edu/plugins/owl/protege (from C:\Program
> Files\Protege_3.2_full\plugins\edu.stanford.smi.protegex.owl\protege.owl)
> INFO: [ProtegeOWLParser] Importing 
> http://www.nbirn.net/birnlex/1.2/BIRNLex-CogBehavior.owl
> INFO: [ProtegeOWLParser] Completed triple loading after 39813 ms
> INFO: [TripleChangePostProcessor] Completed lists after 0 ms
> INFO: [TripleChangePostProcessor] Completed anonymous classes after 63 ms
> INFO: [TripleChangePostProcessor] Completed deprecated classes after 109 ms
> INFO: [TripleChangePostProcessor] Completed properties after 313 ms
> INFO: [TripleChangePostProcessor] Completed named classes after 203 ms
> INFO: ... Loading completed after 41954 ms
> WARNING: Child node not found: Cls(owl:Class, FrameID(0:9004 0)) -- 
> ComponentUtilities.getTreePath()
>
> WARNING: Child node not found: Cls(owl:Class, FrameID(0:9004 0)) -- 
> ComponentUtilities.getTreePath()
>
> Exception in thread "AWT-EventQueue-0" 
> java.lang.IllegalArgumentException: @_:A271 not unique: Cls(<
> <deleted>>, FrameID(24:17506 1))
>         at 
> edu.stanford.smi.protege.model.framestore.SimpleFrameStore.uniqueName(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.SimpleFrameStore.addCls(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.SimpleFrameStore.createCls(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore.createCls(Unknown 
> Sour
> ce)
>         at 
> edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore.createCls(Unknown 
> Sourc
> e)
>         at 
> edu.stanford.smi.protege.model.framestore.undo.DeleteClsCommand.undoIt(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.undo.MacroCommand.undoIt(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.undo.MacroCommand.undoIt(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.model.framestore.undo.UndoFrameStore.undo(Unknown 
> Source)
>         at 
> edu.stanford.smi.protege.action.UndoAction.actionPerformed(Unknown Source)
>         at 
> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1849)
>         at 
> javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2169)
>         at 
> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420)
>         at 
> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258)
>         at javax.swing.AbstractButton.doClick(AbstractButton.java:302)
>         at 
> javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1000)
>         at 
> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:1041)
>         at java.awt.Component.processMouseEvent(Component.java:5488)
>         at javax.swing.JComponent.processMouseEvent(JComponent.java:3126)
>         at java.awt.Component.processEvent(Component.java:5253)
>         at java.awt.Container.processEvent(Container.java:1966)
>         at java.awt.Component.dispatchEventImpl(Component.java:3955)
>         at java.awt.Container.dispatchEventImpl(Container.java:2024)
>         at java.awt.Component.dispatchEvent(Component.java:3803)
>         at 
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4212)
>         at 
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3892)
>         at java.awt.LightweightDispatcher.dispatchEvent(Container.java:3822)
>         at java.awt.Container.dispatchEventImpl(Container.java:2010)
>         at java.awt.Window.dispatchEventImpl(Window.java:1778)
>         at java.awt.Component.dispatchEvent(Component.java:3803)
>         at java.awt.EventQueue.dispatchEvent(EventQueue.java:463)
>         at 
> java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:242)
>         at 
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163)
>         at 
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157)
>         at 
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149)
>         at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)
>
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