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[protege-discussion] Export error

Tania Tudorache tudorache at stanford.edu
Tue Sep 25 11:44:12 PDT 2007


Hi Bo,

It seems that your ontologies are really giving the converter a hard time :)

I've looked at the code, but I could not figure out the problem, so I 
would need to debug this with the ontology you have used. Or, I need a 
simpler case that reproduces the same error.

Cheers,
Tania



Bo De Lange wrote:
> Hi there,
>
> thanks for the 3.4 beta release and all the improvements it contains. 
> Much appreciated.
> Anxious to try out the new native owl writer on export, we ran into 
> the following error message:
>
> Export failed: edu.stanford.smi.protege.util.MessageError at b59a10.
>
> The following error log was generated:
>
> cwd: C:\Program Files (x86)\Protege\Protege_3.4_beta\
>
> cmd: "C:\Program Files 
> (x86)\Protege\Protege_3.4_beta\jre\bin\java.exe" -Xms1000
>
> 00000 -Xmx1100000000 -classpath "C:\Program Files 
> (x86)\Protege\Protege_3.4_beta
>
> \protege.jar;C:\Program Files 
> (x86)\Protege\Protege_3.4_beta\looks-2.1.3.jar;C:\
>
> Program Files 
> (x86)\Protege\Protege_3.4_beta\unicode_panel.jar;C:\Program Files
>
> (x86)\Protege\Protege_3.4_beta\driver.jar;C:\Program Files 
> (x86)\Protege\Protege
>
> _3.4_beta\driver0.jar;C:\Program Files 
> (x86)\Protege\Protege_3.4_beta\driver1.ja
>
> r;C:\Program Files 
> (x86)\Protege\Protege_3.4_beta\driver2.jar;C:\Program Files (
>
> x86)\Protege\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.changes\change-m
>
> odel.jar;C:\Program Files (x86)\Protege\Protege_3.4_beta\lax.jar;" 
> com.zerog.lax
>
> .LAX "C:/Program Files (x86)/Protege/Protege_3.4_beta/Protege.lax" 
> "C:/Documents
>
>  and Settings/Henk-Jan/Local Settings/Temp/lax364.tmp"
>
> CONFIG: Protege 3.4 Build 104, JVM 1.5.0_11-b03, memory=1092M, Windows 
> 2003, enc
>
> oding=UTF-8, language=nl, country=NL
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin
>
> CONFIG: Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya
>
> CONFIG: Loaded plugin dfki.protege.ontoviz
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.rdf_backend - RDF Backend
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.changes - Changes tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.chatPlugin
>
> CONFIG: Loaded plugin edu.stanford.smi.protege.collab - Collaborative 
> Protege
>
> CONFIG: Loaded plugin edu.stanford.smi.protege.script - Script Plugin
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.standard_extensions - 
> Graph Widg
>
> et, Table Widget
>
> CONFIG: Loaded plugin edu.stanford.smi.protege.stringsearch - String 
> Search Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.datamaster - 
> DataMaster Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.facets_tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.instance_tree
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab
>
> CONFIG: Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab
>
> CONFIG: Loaded plugin org.algernon - Algernon
>
> CONFIG: Loaded plugin se.liu.ida.JessTab - JessTab Plugin
>
> CONFIG: Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.debugger
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owldoc
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlviz
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic 
> Wizards
>
> CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL 
> Wizards
>
> CONFIG: Preloading frame values
>
> CONFIG: Preloading frame values
>
> WARNING: Missing map instance: FSD_2_0_0_0_ProjectKB_Instance_140740 
> -- Property
>
> MapUtil.getMap()
>
> WARNING: null -- WidgetUtilities.isSuitableExport()
>
> CONFIG: PROMPT: Loaded plugin ca.uvic.cs.cogz.PromptUIPlugin - CogZ
>
> CONFIG: PROMPT: Loaded plugin 
> edu.stanford.smi.protegex.promptx.foam.FoamPlugin
>
> - FOAM Plugin for Prompt
>
> CONFIG: PROMPT: Loaded plugin 
> edu.stanford.smi.protegex.promptx.mappingDomainPSM
>
> .MappingDomainPSM - Store mappings using the Domain_PSM ontology
>
> CONFIG: PROMPT: Loaded plugin 
> edu.stanford.smi.protegex.promptx.simpleMappingSto
>
> rage.SimpleMappingStorage - Store mapping using a simple mapping ontology
>
> CONFIG: PROMPT: Loaded plugin 
> edu.stanford.smi.protegex.promptx.synonyms.Synonym
>
> Plugin - Lexical matching with synonyms
>
> CONFIG: PROMPT: Loaded plugin 
> edu.stanford.smi.protegex.promptx.umls.UMLSPlugin
>
> - Using UMLS concept identifiers for matching
>
> INFO: Prompt version 3.0
>
> INFO: Prompt version date: August 8, 2006
>
> INFO: UI display time = 1 sec
>
> [ProtegeUI]  Warning: No ProjectView registered for project null
>
> [ProtegeUI]  Warning: No ProjectView registered for project null
>
> -----
>
> WARNING: Wrong type: DefaultOWLNamedClass(personalia_oogarts, 
> FrameID(17:43362 1
>
> )) -- DefaultKnowledgeBase.getFrameOfType()
>
> SEVERE: Failed to save file 
> file:/C:/Documents%20and%20Settings/Henk-Jan/zoom1.o
>
> wl -- java.lang.ClassCastException: 
> edu.stanford.smi.protege.model.DefaultCls
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.util.Util.getType(Unknown
>
>  Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
>
> .renderIndividualAxioms(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
>
> .visitRDFIndividual(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.model.impl.DefaultRDFIndividual.accept(
>
> Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.renderer.RDFAxiomRenderer
>
> .write(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelContent
>
> Writer.writeContent(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.RDFXMLDocumentW
>
> riter.writeDocument(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelWriter.
>
> write(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.writer.rdfxml.rdfwriter.OWLModelAllTrip
>
> leStoresWriter.write(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.jena.JenaOWLModel.save(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin.exportProj
>
> ect(Unknown Source)
>
>         at 
> edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin.handleExpo
>
> rtRequest(Unknown Source)
>
>         at 
> edu.stanford.smi.protege.ui.ProjectManager.exportProjectRequest(Unkno
>
> wn Source)
>
>         at 
> edu.stanford.smi.protege.action.ExportPluginAction.actionPerformed(Un
>
> known Source)
>
>         at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
>
>         at javax.swing.AbstractButton$Handler.actionPerformed(Unknown 
> Source)
>
>         at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown 
> Source)
>
>         at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
>
>         at javax.swing.AbstractButton.doClick(Unknown Source)
>
>         at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
>
>         at 
> javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown
>
> Source)
>
>         at java.awt.Component.processMouseEvent(Unknown Source)
>
>         at javax.swing.JComponent.processMouseEvent(Unknown Source)
>
>         at java.awt.Component.processEvent(Unknown Source)
>
>         at java.awt.Container.processEvent(Unknown Source)
>
>         at java.awt.Component.dispatchEventImpl(Unknown Source)
>
>         at java.awt.Container.dispatchEventImpl(Unknown Source)
>
>         at java.awt.Component.dispatchEvent(Unknown Source)
>
>         at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown 
> Source)
>
>         at java.awt.LightweightDispatcher.processMouseEvent(Unknown 
> Source)
>
>         at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
>
>         at java.awt.Container.dispatchEventImpl(Unknown Source)
>
>         at java.awt.Window.dispatchEventImpl(Unknown Source)
>
>         at java.awt.Component.dispatchEvent(Unknown Source)
>
>         at java.awt.EventQueue.dispatchEvent(Unknown Source)
>
>         at 
> java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
>
>  
>
>         at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown 
> Source)
>
>         at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
>
>         at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
>
>         at java.awt.EventDispatchThread.run(Unknown Source)
>
>  
>
> [ProtegeUI]  Warning: No ProjectView registered for project zoom1
>
>
> Any help appreciated!
>
>
>
> Bo
>
>
> ------------------------------------------------------------------------
>
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