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[protege-discussion] query about loading a file

Swetha Bose Nutakki swetha.bose at gmail.com
Thu Feb 5 11:47:05 PST 2009


 Hi,
I am trying to input the RDF formatted instances mined from MEDLINE with
OpenDMAP as shown in the paper "OpenDMAP: An open source, ontology-driven
concept analysis engine, with applications to capturing knowledge regarding
protein transport, protein interactions and cell-type-specific gene
expression" in to Protege and visualize the interactions. The files are
given as additional files on the 10th page of the above mentioned paper.

Additional file 2
Interaction instances from MEDLINE, part 1. The interaction data set
is very large. This file contains the first half of RDF formatted instances
of interaction, mined from MEDLINE with OpenDMAP.
Click here for file
[http://www.biomedcentral.com/content/supplementary/1471-
2105-9-78-S2.GZ]

Additional file 3
Interaction instances from MEDLINE, part 2. The interaction data set
is very large. This file contains the second half of RDF formatted instances
of interaction, mined from MEDLINE with OpenDMAP.
Click here for file
[http://www.biomedcentral.com/content/supplementary/1471-
2105-9-78-S3.GZ]

The triples are loaded but nothing is happening later. Can you guide me on
to use these files and view them as interactions.

Thanks & Regards,
Swetha
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