[protege-discussion] Trying to Start Protege 3.3.1 server on Linux

[Bhaskar Ghosh]

Hi Sam,

Protege Server needs the RMI Registry to run. 1099 is the default RMI port. The error message indicate that the port 1099 is already in use. you can start RMI server on a different port (edit the corresponding line inside the run_protege_server.sh file)

 thanks
Bhaskar

"Ignorance is Bliss... Knowledge never brings Peace!!!"




________________________________
From: Samuel Lee <samlee at ncmir.ucsd.edu>
To: protege-discussion at mailman.stanford.edu
Sent: Friday, 17 July, 2009 11:33:31 PM
Subject: [protege-discussion] Trying to Start Protege 3.3.1 server on Linux

When trying to start the Protege Server 3.3.1, I'm getting the following errors:

Any ideas?

Sam


[root at protege33 Protege_3.3.1]# ./run_protege_server.sh
java.rmi.server.ExportException: Port already in use: 1099; nested exception is:
    java.net.BindException: Address already in use
    at sun.rmi.transport.tcp.TCPTransport.listen(TCPTransport.java:310)
    at sun.rmi.transport.tcp.TCPTransport.exportObject(TCPTransport.java:218)
    at sun.rmi.transport.tcp.TCPEndpoint.exportObject(TCPEndpoint.java:393)
    at sun.rmi.transport.LiveRef.exportObject(LiveRef.java:129)
    at sun.rmi.server.UnicastServerRef.exportObject(UnicastServerRef.java:190)
    at sun.rmi.registry.RegistryImpl.setup(RegistryImpl.java:92)
    at sun.rmi.registry.RegistryImpl.<init>(RegistryImpl.java:78)
    at sun.rmi.registry.RegistryImpl.main(RegistryImpl.java:322)
Caused by: java.net.BindException: Address already in use
    at java.net.PlainSocketImpl.socketBind(Native Method)
    at java.net.PlainSocketImpl.bind(PlainSocketImpl.java:359)
    at java.net.ServerSocket.bind(ServerSocket.java:319)
    at java.net.ServerSocket.<init>(ServerSocket.java:185)
    at java.net.ServerSocket.<init>(ServerSocket.java:97)
    at sun.rmi.transport.proxy.RMIDirectSocketFactory.createServerSocket(RMIDirectSocketFactory.java:27)
    at sun.rmi.transport.proxy.RMIMasterSocketFactory.createServerSocket(RMIMasterSocketFactory.java:333)
    at sun.rmi.transport.tcp.TCPEndpoint.newServerSocket(TCPEndpoint.java:649)
    at sun.rmi.transport.tcp.TCPTransport.listen(TCPTransport.java:299)
    ... 7 more
CONFIG: Protege 3.3.1 Build 430, JVM 1.6.0_13-b03, memory=208M, Linux, encoding=UTF-8, language=en, country=US
CONFIG: Loaded plugin org.algernon - Algernon
CONFIG: Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owldoc
CONFIG: Loaded plugin edu.stanford.smi.protegex.rdf_backend - RDF Backend
CONFIG: Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.datamaster - DataMaster Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.facets_tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.changes - Changes tab
CONFIG: Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya
CONFIG: Loaded plugin edu.stanford.smi.protegex.instance_tree
CONFIG: Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs
CONFIG: Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.standard_extensions - Graph Widget, Table Widget
CONFIG: Loaded plugin edu.stanford.smi.protegex.chatPlugin
CONFIG: Loaded plugin edu.stanford.smi.protege.collab - Collaborative Protege
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic Wizards
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL Wizards
CONFIG: Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.debugger
CONFIG: Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT Tab
CONFIG: Loaded plugin edu.stanford.smi.protege.stringsearch - String Search Tab
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlviz
CONFIG: Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab
CONFIG: Loaded plugin edu.stanford.smi.protege.script - Script Plugin
CONFIG: Loaded plugin dfki.protege.ontoviz
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor
CONFIG: Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab
CONFIG: Loaded plugin se.liu.ida.JessTab - JessTab Plugin
SEVERE: java.rmi.ConnectException: Connection refused to host: 198.202.95.113; nested exception is:
    java.net.ConnectException: Connection refused
    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:601)
    at sun.rmi.transport.tcp.TCPChannel.createConnection(TCPChannel.java:198)
    at sun.rmi.transport.tcp.TCPChannel.newConnection(TCPChannel.java:184)
    at sun.rmi.server.UnicastRef.newCall(UnicastRef.java:322)
    at sun.rmi.registry.RegistryImpl_Stub.rebind(Unknown Source)
    at edu.stanford.smi.protege.server.Server.bindName(Unknown Source)
    at edu.stanford.smi.protege.server.Server.initialize(Unknown Source)
    at edu.stanford.smi.protege.server.Server.<init>(Unknown Source)
    at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
    at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
    at edu.stanford.smi.protege.server.Server.main(Unknown Source)
Caused by: java.net.ConnectException: Connection refused
    at java.net.PlainSocketImpl.socketConnect(Native Method)
    at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
    at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
    at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
    at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
    at java.net.Socket.connect(Socket.java:519)
    at java.net.Socket.connect(Socket.java:469)
    at java.net.Socket.<init>(Socket.java:366)
    at java.net.Socket.<init>(Socket.java:180)
    at edu.stanford.smi.protege.server.ServerRmiSocketFactory.createSocket(Unknown Source)
    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:595)
    ... 10 more
-- Server.bindName()
SEVERE: server startup failed -- java.rmi.ConnectException: Connection refused to host: 198.202.95.113; nested exception is:
    java.net.ConnectException: Connection refused
    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:601)
    at sun.rmi.transport.tcp.TCPChannel.createConnection(TCPChannel.java:198)
    at sun.rmi.transport.tcp.TCPChannel.newConnection(TCPChannel.java:184)
    at sun.rmi.server.UnicastRef.newCall(UnicastRef.java:322)
    at sun.rmi.registry.RegistryImpl_Stub.rebind(Unknown Source)
    at edu.stanford.smi.protege.server.Server.bindName(Unknown Source)
    at edu.stanford.smi.protege.server.Server.initialize(Unknown Source)
    at edu.stanford.smi.protege.server.Server.<init>(Unknown Source)
    at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
    at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
    at edu.stanford.smi.protege.server.Server.main(Unknown Source)
Caused by: java.net.ConnectException: Connection refused
    at java.net.PlainSocketImpl.socketConnect(Native Method)
    at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
    at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
    at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
    at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
    at java.net.Socket.connect(Socket.java:519)
    at java.net.Socket.connect(Socket.java:469)
    at java.net.Socket.<init>(Socket.java:366)
    at java.net.Socket.<init>(Socket.java:180)
    at edu.stanford.smi.protege.server.ServerRmiSocketFactory.createSocket(Unknown Source)
    at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:595)
    ... 10 more



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