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[protege-discussion] (no subject)

Safran, Tracy (NIH/NCI) [C] safrant at mail.nih.gov
Fri Mar 6 15:23:19 PST 2009


You need to specifically increase PermGen space.  Java option -XX:MaxPermSize=256M

Tracy M. Safran
Contractor - SAIC Frederick
EVS support
301-402-1537


-----Original Message-----
From: Csongor Nyulas [mailto:csongor.nyulas at stanford.edu] 
Sent: Friday, March 06, 2009 5:44 PM
To: User support for Core Protege and the Protege-Frames editor
Subject: Re: [protege-discussion] (no subject)

Yes, you should increase the memory even more. That's the only thing you 
can do if you want to open the ontology from file.

Csongor

vbertaud at aol.com wrote:
> Hi,
>
> I tried to open the Foundational Model of Anatomy (FMA)  in OWL 
> (fma20OWLDLcomponent.owl) after download from 
> http://www.bioontology.org/wiki/index.php/FMAInOwl.
>
> After loading 90 000 triples, the protege window displays an error 
> message:
>
> Exception occured during event dispatching:
> java.lang.OutOfMemoryError: PermGen space
>
> How come and how can I fix it?
>
> I 've already tried to change the heap size max in the protege.lax 
> file to 800 000 000. But it still doesn't work. The error message 
> appear after loading 134 000 triples. Shall I enhance the heap size 
> max again?
>
> (I am using Protege3.4.)
>
> Thanks in advance
>
> Valérie BERTAUD
>
> -------------------------------------------------------------------------------------------
> Dr Valérie BERTAUD
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>
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