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[protege-discussion] WebProtege ontology loading failure

Manolis Platakis platakis at di.uoa.gr
Fri May 8 16:19:19 PDT 2009 

Tania Tudorache wrote:
> Hi Manolis,
> 

Hi Tania! Thanks for your immediate response!

> If you answer the following questions, I might be able to help.
> 
> 1. What Protege version you are using?
> 

I use Protege 3.4 the new version (not the beta one).

> 2. Did the Protege server start successfully?
> 

At first I had some problems but after executing rmiregistry 1099 the
server started successfully.

> 3. Did you create a user "webprotege" with the password "webprotege" in 
> the metaproject? This is how WebProtege connects to the Protege server. 
> If you didn't, then this is the problem. Add the user "webprotege" to 
> the group "World". Make sure that the group World has read access to the 
> Pizza project. See: 
> http://protegewiki.stanford.edu/index.php/Protege_Client_Server_Tutorial_Configuration
> 

I have already added the user and the password. All the available
projects show up in the list when executing WebProtege.

> 4. Try to connect with a Protege client to the server, using the 
> user/pass: webprotege/webprotege and try to open project Pizza. Did you 
> succeed?
> 

I 'll do that on Monday and get back to you (it's the dawn of Saturday
in Greece :-)).

> 5. If you succeeded with all previous steps, but still has problems, 
> please send me the metaproject files and the a zip file with 
> catalina.out from the tomcat/logs folder.
> 

I will also zip and e-mail the logs.

Thanks again!

Manolis

> Tania
> 
> 
> Manolis Platakis wrote:
>> Hello,
>>
>> I have a problem concerning WebProtege. I am executing WebProtege from
>> the Eclipse IDE (in both hosted and web mode) and everything works
>> perfectly fine until I try to load an ontology where I get the error
>> "Load project Pizza failed. Message: The call failed on the server;
>> see server log for details". You can see the errors in the end of my
>> e-mail. I have tried both absolute and relative (to Protege server)
>> paths for the ontologies in the metaproject with no luck. I have also
>> made sure that the metaproject files are identical in both places.
>>
>> I would really be grateful if you could help me out. Thanks you very
>> much for your help and effort.
>>
>> Best regards,
>> Manolis Platakis
>>
>> [WARN] StandardContext[]Exception while dispatching incoming RPC call
>> com.google.gwt.user.server.rpc.UnexpectedException: Service method
>> 'public abstract java.lang.Integer
>> edu.stanford.bmir.protege.web.client.rpc.OntologyService.loadProject(java.lang.String)'
>> threw an unexpected exception: java.lang.RuntimeException: Cannot open
>> project Pizza
>> 	at com.google.gwt.user.server.rpc.RPC.encodeResponseForFailure(RPC.java:360)
>> 	at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:546)
>> 	at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:164)
>> 	at com.google.gwt.user.server.rpc.RemoteServiceServlet.doPost(RemoteServiceServlet.java:86)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>> 	at com.google.gwt.dev.shell.GWTShellServlet.service(GWTShellServlet.java:289)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>> 	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:237)
>> 	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:157)
>> 	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:214)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardContextValve.invokeInternal(StandardContextValve.java:198)
>> 	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:152)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:137)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:118)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:102)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:929)
>> 	at org.apache.coyote.tomcat5.CoyoteAdapter.service(CoyoteAdapter.java:160)
>> 	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:799)
>> 	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConnection(Http11Protocol.java:705)
>> 	at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:577)
>> 	at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:683)
>> 	at java.lang.Thread.run(Unknown Source)
>> Caused by: java.lang.RuntimeException: Cannot open project Pizza
>> 	at edu.stanford.bmir.protege.web.server.ProjectManager.ensureProjectOpen(ProjectManager.java:110)
>> 	at edu.stanford.bmir.protege.web.server.ProjectManager.getServerProject(ProjectManager.java:101)
>> 	at edu.stanford.bmir.protege.web.server.OntologyServiceImpl.loadProject(OntologyServiceImpl.java:106)
>> 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> 	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>> 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>> 	at java.lang.reflect.Method.invoke(Unknown Source)
>> 	at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:527)
>> 	at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:164)
>> 	at com.google.gwt.user.server.rpc.RemoteServiceServlet.doPost(RemoteServiceServlet.java:86)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>> 	at com.google.gwt.dev.shell.GWTShellServlet.service(GWTShellServlet.java:289)
>> 	at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>> 	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:237)
>> 	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:157)
>> 	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:214)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardContextValve.invokeInternal(StandardContextValve.java:198)
>> 	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:152)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:137)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:118)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:102)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>> 	at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>> 	at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>> 	at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:929)
>> 	at org.apache.coyote.tomcat5.CoyoteAdapter.service(CoyoteAdapter.java:160)
>> 	at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:799)
>> 	at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConnection(Http11Protocol.java:705)
>> 	at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:577)
>> 	at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:683)
>> 	at java.lang.Thread.run(Unknown Source)
>>
>> [ERROR] There were errors at loading project Pizza
>> com.google.gwt.user.client.rpc.StatusCodeException: The call failed on
>> the server; see server log for details
>> 	at com.google.gwt.user.client.rpc.impl.RequestCallbackAdapter.onResponseReceived(RequestCallbackAdapter.java:192)
>> 	at com.google.gwt.http.client.Request.fireOnResponseReceivedImpl(Request.java:254)
>> 	at com.google.gwt.http.client.Request.fireOnResponseReceivedAndCatch(Request.java:226)
>> 	at com.google.gwt.http.client.Request.fireOnResponseReceived(Request.java:217)
>> 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>> 	at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>> 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>> 	at java.lang.reflect.Method.invoke(Unknown Source)
>> 	at com.google.gwt.dev.shell.MethodAdaptor.invoke(MethodAdaptor.java:103)
>> 	at com.google.gwt.dev.shell.ie.IDispatchImpl.callMethod(IDispatchImpl.java:126)
>> 	at com.google.gwt.dev.shell.ie.IDispatchProxy.invoke(IDispatchProxy.java:155)
>> 	at com.google.gwt.dev.shell.ie.IDispatchImpl.Invoke(IDispatchImpl.java:294)
>> 	at com.google.gwt.dev.shell.ie.IDispatchImpl.method6(IDispatchImpl.java:194)
>> 	at org.eclipse.swt.internal.ole.win32.COMObject.callback6(COMObject.java:117)
>> 	at org.eclipse.swt.internal.win32.OS.DispatchMessageW(Native Method)
>> 	at org.eclipse.swt.internal.win32.OS.DispatchMessage(OS.java:1925)
>> 	at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2966)
>> 	at com.google.gwt.dev.GWTShell.pumpEventLoop(GWTShell.java:720)
>> 	at com.google.gwt.dev.GWTShell.run(GWTShell.java:593)
>> 	at com.google.gwt.dev.GWTShell.main(GWTShell.java:357)
>>
>>   
> 
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-- 
Manolis Platakis, Postgraduate Student & Research Associate
Department of Informatics and Telecommunications
National and Kapodistrian University of Athens
http://cgi.di.uoa.gr/~platakis/

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