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[protege-discussion] WebProtege ontology loading failure

Manolis Platakis platakis at di.uoa.gr
Mon May 11 06:02:55 PDT 2009


It's actually working right now! Probably restarting the whole system
saved the day. Thanks again for your help.

On Mon, May 11, 2009 at 3:00 PM, Manolis Platakis <platakis at di.uoa.gr> wrote:
>> 4. Try to connect with a Protege client to the server, using the
>> user/pass: webprotege/webprotege and try to open project Pizza. Did you
>> succeed?
>>
>
> I succeeded.
>
>> 5. If you succeeded with all previous steps, but still has problems,
>> please send me the metaproject files and the a zip file with
>> catalina.out from the tomcat/logs folder.
>>
>
> Should I e-mail you the log?
>
> Thank you very much!
>
> Manolis
>
>>
>> Manolis Platakis wrote:
>>> Hello,
>>>
>>> I have a problem concerning WebProtege. I am executing WebProtege from
>>> the Eclipse IDE (in both hosted and web mode) and everything works
>>> perfectly fine until I try to load an ontology where I get the error
>>> "Load project Pizza failed. Message: The call failed on the server;
>>> see server log for details". You can see the errors in the end of my
>>> e-mail. I have tried both absolute and relative (to Protege server)
>>> paths for the ontologies in the metaproject with no luck. I have also
>>> made sure that the metaproject files are identical in both places.
>>>
>>> I would really be grateful if you could help me out. Thanks you very
>>> much for your help and effort.
>>>
>>> Best regards,
>>> Manolis Platakis
>>>
>>> [WARN] StandardContext[]Exception while dispatching incoming RPC call
>>> com.google.gwt.user.server.rpc.UnexpectedException: Service method
>>> 'public abstract java.lang.Integer
>>> edu.stanford.bmir.protege.web.client.rpc.OntologyService.loadProject(java.lang.String)'
>>> threw an unexpected exception: java.lang.RuntimeException: Cannot open
>>> project Pizza
>>>       at com.google.gwt.user.server.rpc.RPC.encodeResponseForFailure(RPC.java:360)
>>>       at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:546)
>>>       at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:164)
>>>       at com.google.gwt.user.server.rpc.RemoteServiceServlet.doPost(RemoteServiceServlet.java:86)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>>>       at com.google.gwt.dev.shell.GWTShellServlet.service(GWTShellServlet.java:289)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>>>       at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:237)
>>>       at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:157)
>>>       at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:214)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardContextValve.invokeInternal(StandardContextValve.java:198)
>>>       at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:152)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:137)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:118)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:102)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:929)
>>>       at org.apache.coyote.tomcat5.CoyoteAdapter.service(CoyoteAdapter.java:160)
>>>       at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:799)
>>>       at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConnection(Http11Protocol.java:705)
>>>       at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:577)
>>>       at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:683)
>>>       at java.lang.Thread.run(Unknown Source)
>>> Caused by: java.lang.RuntimeException: Cannot open project Pizza
>>>       at edu.stanford.bmir.protege.web.server.ProjectManager.ensureProjectOpen(ProjectManager.java:110)
>>>       at edu.stanford.bmir.protege.web.server.ProjectManager.getServerProject(ProjectManager.java:101)
>>>       at edu.stanford.bmir.protege.web.server.OntologyServiceImpl.loadProject(OntologyServiceImpl.java:106)
>>>       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>       at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>>>       at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>>>       at java.lang.reflect.Method.invoke(Unknown Source)
>>>       at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:527)
>>>       at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:164)
>>>       at com.google.gwt.user.server.rpc.RemoteServiceServlet.doPost(RemoteServiceServlet.java:86)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>>>       at com.google.gwt.dev.shell.GWTShellServlet.service(GWTShellServlet.java:289)
>>>       at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
>>>       at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:237)
>>>       at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:157)
>>>       at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:214)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardContextValve.invokeInternal(StandardContextValve.java:198)
>>>       at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:152)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:137)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:118)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:102)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
>>>       at org.apache.catalina.core.StandardValveContext.invokeNext(StandardValveContext.java:104)
>>>       at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:520)
>>>       at org.apache.catalina.core.ContainerBase.invoke(ContainerBase.java:929)
>>>       at org.apache.coyote.tomcat5.CoyoteAdapter.service(CoyoteAdapter.java:160)
>>>       at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:799)
>>>       at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.processConnection(Http11Protocol.java:705)
>>>       at org.apache.tomcat.util.net.TcpWorkerThread.runIt(PoolTcpEndpoint.java:577)
>>>       at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:683)
>>>       at java.lang.Thread.run(Unknown Source)
>>>
>>> [ERROR] There were errors at loading project Pizza
>>> com.google.gwt.user.client.rpc.StatusCodeException: The call failed on
>>> the server; see server log for details
>>>       at com.google.gwt.user.client.rpc.impl.RequestCallbackAdapter.onResponseReceived(RequestCallbackAdapter.java:192)
>>>       at com.google.gwt.http.client.Request.fireOnResponseReceivedImpl(Request.java:254)
>>>       at com.google.gwt.http.client.Request.fireOnResponseReceivedAndCatch(Request.java:226)
>>>       at com.google.gwt.http.client.Request.fireOnResponseReceived(Request.java:217)
>>>       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>>>       at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
>>>       at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
>>>       at java.lang.reflect.Method.invoke(Unknown Source)
>>>       at com.google.gwt.dev.shell.MethodAdaptor.invoke(MethodAdaptor.java:103)
>>>       at com.google.gwt.dev.shell.ie.IDispatchImpl.callMethod(IDispatchImpl.java:126)
>>>       at com.google.gwt.dev.shell.ie.IDispatchProxy.invoke(IDispatchProxy.java:155)
>>>       at com.google.gwt.dev.shell.ie.IDispatchImpl.Invoke(IDispatchImpl.java:294)
>>>       at com.google.gwt.dev.shell.ie.IDispatchImpl.method6(IDispatchImpl.java:194)
>>>       at org.eclipse.swt.internal.ole.win32.COMObject.callback6(COMObject.java:117)
>>>       at org.eclipse.swt.internal.win32.OS.DispatchMessageW(Native Method)
>>>       at org.eclipse.swt.internal.win32.OS.DispatchMessage(OS.java:1925)
>>>       at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:2966)
>>>       at com.google.gwt.dev.GWTShell.pumpEventLoop(GWTShell.java:720)
>>>       at com.google.gwt.dev.GWTShell.run(GWTShell.java:593)
>>>       at com.google.gwt.dev.GWTShell.main(GWTShell.java:357)
>>>
>>>
>>
>> _______________________________________________
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>> protege-discussion at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>>
>> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03
>>
>
>
>
> --
> Manolis Platakis, Postgraduate Student & Research Associate
> Department of Informatics and Telecommunications
> National and Kapodistrian University of Athens
> http://cgi.di.uoa.gr/~platakis/
>



-- 
Manolis Platakis, Postgraduate Student & Research Associate
Department of Informatics and Telecommunications
National and Kapodistrian University of Athens
http://cgi.di.uoa.gr/~platakis/



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