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[protege-discussion] REMINDER: NCBO Webinar - Rebecca Crowley, March 3

Trish Whetzel plwhetzel at
Tue Mar 2 13:04:17 PST 2010

The next NCBO Webinar will be held TOMORROW, Wednesday, March 3 at 10am PT.
Please note there will not be a VOIP option and attendees must call into the

The Webinar will be presented by Dr. Rebecca Crowley, MD, MSIS, from the
University of Pittsburgh School of Medicine. The title of the presentation
will be “Progress on the ODIE (Ontology Development and Information
Extraction) Toolkit”. Below is information on how to join the online meeting
and accompanying teleconference. For a schedule of the 2010 presentations or
for more information about the NCBO Seminar series, see:
Progress on the ODIE Toolkit

A few months ago, we quietly released ODIE 1.0 on the NCBO GForge site. ODIE
is an application that let's researchers (1) analyze text corpora using
BioPortal ontologies to map text to BioPortal concepts, and (2) identify
candidate concepts within text corpora that could be considered for addition
to an existing ontology. The ODIE project has made some significant advances
this year - including (1) complete redesign to use the UIMA platform, (2)
integration of Mayo cTAKES pipeline into ODIE, (3) addition of a simple
co-reference resolution algorithm as UIMA resource, and (4) addition of
statistical as well as linguistic methods for discovering candidate
concepts. In addition to the software, we've been working on developing
co-reference corpora, and testing a variety of existing methods for ontology
enrichment using domain experts and ontology developers as judges. This talk
will demonstrate the latest release and will sample some of the year's
research project findings. I will also preview the upcoming release – ODIE
1.1 which includes improved installation, visualization, placement of
candidate concepts and export of proposals as OWL files.

Topic: NCBO Seminar Series
Date: Wednesday, March 3, 2010
Time: 10:00 am, Pacific Standard Time (San Francisco, GMT-08:00)
Meeting Number: 926 719 478
Meeting Password: ncbomeeting

To join the online meeting (Now from iPhones too!)
1. Go to
2. Enter your name and email address.
3. Enter the meeting password: ncbomeeting
4. Click "Join Now".
5. Follow the instructions that appear on your screen.

To view in other time zones or languages, please click the link:

To join the audio conference only
Call-in toll number (US/Canada): 1-650-429-3300
Global call-in numbers:

Access code:926 719 478

For assistance
1. Go to
2. On the left navigation bar, click "Support".

You can contact me at:
whetzel at

To update this meeting to your calendar program (for example Microsoft
Outlook), click this link:

WebEx will automatically setup Meeting Manager for Windows the first time
you join a meeting. To save time, you can setup prior to the meeting by
clicking this link:

IMPORTANT NOTICE: This WebEx service includes a feature that allows audio
and any documents and other materials exchanged or viewed during the session
to be recorded. By joining this session, you automatically consent to such
recordings. If you do not consent to the recording, do not join the session.
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