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[protege-discussion] Interface

Csongor Nyulas csongor.nyulas at stanford.edu
Fri Aug 26 12:28:07 PDT 2011 

Thanks for letting us know. There is always something to learn.

For others, interested in this thread, here is the wiki page that Karl 
has referred to:
http://protegewiki.stanford.edu/wiki/Troubleshooting_Client_Server_Connections
Csongor

On 8/25/2011 6:19 PM, Schulmeisters, Karl wrote:
>
> So in the end what it turned out to be was a lack of documentation in 
> the Protégé Server deployment for Windows -- which they have now 
> corrected.   Turns out that there is an environment variable setting 
> in the Run_Protege_server.bat file that assumes out of the box that 
> you are running the Protégé Server out of "c:\program 
> files\Protege_3.4.xxx"   But with Windows Server 2008 onwards, 32-bit 
> executables get placed in "C:\program files (x86)\Protege_3.4.xxx"  
> and you need to manually go in and fixup the
>
> CODEBASE_URL
>
> Environment setting to the proper path.   The reason it worked on my 
> laptop is that while I'm running Windows 7, it's the 32 bit version of 
> Win 7 and thus has no 64bit capability and no need to differentiate 
> the executables.
>
> *Karl *
>
> *From:*protege-discussion-bounces at lists.stanford.edu 
> [mailto:protege-discussion-bounces at lists.stanford.edu] *On Behalf Of 
> *Csongor Nyulas
> *Sent:* Thursday, August 25, 2011 2:19 PM
> *To:* protege-discussion at lists.stanford.edu
> *Subject:* Re: [protege-discussion] Interface
>
> Hi Karl,
>
> The first problem you encountered was due to the inappropriate 
> firewall setting.
> So the solution that you chose, to install to the server behind the 
> firewall, was one way of overcoming this problem and it seemed to have 
> worked for you.
>
> The second problem you have encountered is probably related to the 
> incompatible Protege server and client versions.
> The occurrence of the java.rmi.UnmarshalException is in most of the 
> cases due to incompatible server and clients.
> Please make sure that you are running the same version of Protege both 
> on the server and the client side.
>
> Csongor
>
> On 8/19/2011 7:33 AM, Schulmeisters, Karl wrote:
>
> Ok I have another problem that I'm simply not well versed enough to sort out.  When I run the Protégé Server on my personal machine -- which has direct connection to the internet via local ISP, it starts up just fine,  BUT users inside of my Corpnet can only see it.  When they try to load a project they end up essentially timing out while waiting for the project to load.  They show up as a session connection, they just never get a loaded project.
>   
> Otoh if I connect via Localhost, I get connected just fine
>   
> So I hosted the Protégé server on a BehindThe Firewall VM based Windows server.  Everything installed as expected.  Protégé runs fine in local mode against the database and the metaProject.  Except when I go to load the server  I get a normal startup UNTIL it tries to load the last project.  At which point I get the following error sequence.  Its as though my Jave instance cannot reach the Standford server -- though why it would need to I'm not sure
>   
> Anyone seen this behavior before?  I'll admit, I'm a Java/Tomcat newbie
>   
> SEVERE: java.rmi.ServerException: RemoteException occurred in server thread; nes
> ted exception is:
>          java.rmi.UnmarshalException: error unmarshalling arguments; nested excep
> tion is:
>          java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Server
> _Stub
>          at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source)
>          at sun.rmi.transport.Transport$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at sun.rmi.transport.Transport.serviceCall(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Sour
> ce)
>          at java.lang.Thread.run(Unknown Source)
>          at sun.rmi.transport.StreamRemoteCall.exceptionReceivedFromServer(Unknow
> n Source)
>          at sun.rmi.transport.StreamRemoteCall.executeCall(Unknown Source)
>          at sun.rmi.server.UnicastRef.invoke(Unknown Source)
>          at sun.rmi.registry.RegistryImpl_Stub.rebind(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.bindName(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.main(Unknown Source)
> Caused by: java.rmi.UnmarshalException: error unmarshalling arguments; nested ex
> ception is:
>          java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Server
> _Stub
>          at sun.rmi.registry.RegistryImpl_Skel.dispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source)
>          at sun.rmi.transport.Transport$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at sun.rmi.transport.Transport.serviceCall(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Sour
> ce)
>          at java.lang.Thread.run(Unknown Source)
> Caused by: java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Ser
> ver_Stub
>          at java.net.URLClassLoader$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at java.net.URLClassLoader.findClass(Unknown Source)
>          at java.lang.ClassLoader.loadClass(Unknown Source)
>          at java.lang.ClassLoader.loadClass(Unknown Source)
>          at java.lang.ClassLoader.loadClassInternal(Unknown Source)
>          at java.lang.Class.forName0(Native Method)
>          at java.lang.Class.forName(Unknown Source)
>          at sun.rmi.server.LoaderHandler.loadClass(Unknown Source)
>          at sun.rmi.server.LoaderHandler.loadClass(Unknown Source)
>          at java.rmi.server.RMIClassLoader$2.loadClass(Unknown Source)
>          at java.rmi.server.RMIClassLoader.loadClass(Unknown Source)
>          at sun.rmi.server.MarshalInputStream.resolveClass(Unknown Source)
>          at java.io.ObjectInputStream.readNonProxyDesc(Unknown Source)
>          at java.io.ObjectInputStream.readClassDesc(Unknown Source)
>          at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source)
>          at java.io.ObjectInputStream.readObject0(Unknown Source)
>          at java.io.ObjectInputStream.readObject(Unknown Source)
>          ... 9 more
>   -- Server.bindName()
> SEVERE: server startup failed -- java.rmi.ServerException: RemoteException occur
> red in server thread; nested exception is:
>          java.rmi.UnmarshalException: error unmarshalling arguments; nested excep
> tion is:
>          java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Server
> _Stub
>          at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source)
>          at sun.rmi.transport.Transport$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at sun.rmi.transport.Transport.serviceCall(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Sour
> ce)
>          at java.lang.Thread.run(Unknown Source)
>          at sun.rmi.transport.StreamRemoteCall.exceptionReceivedFromServer(Unknow
> n Source)
>          at sun.rmi.transport.StreamRemoteCall.executeCall(Unknown Source)
>          at sun.rmi.server.UnicastRef.invoke(Unknown Source)
>          at sun.rmi.registry.RegistryImpl_Stub.rebind(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.bindName(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.startServer(Unknown Source)
>          at edu.stanford.smi.protege.server.Server.main(Unknown Source)
> Caused by: java.rmi.UnmarshalException: error unmarshalling arguments; nested ex
> ception is:
>          java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Server
> _Stub
>          at sun.rmi.registry.RegistryImpl_Skel.dispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.oldDispatch(Unknown Source)
>          at sun.rmi.server.UnicastServerRef.dispatch(Unknown Source)
>          at sun.rmi.transport.Transport$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at sun.rmi.transport.Transport.serviceCall(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown Source)
>          at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Sour
> ce)
>          at java.lang.Thread.run(Unknown Source)
> Caused by: java.lang.ClassNotFoundException: edu.stanford.smi.protege.server.Ser
> ver_Stub
>          at java.net.URLClassLoader$1.run(Unknown Source)
>          at java.security.AccessController.doPrivileged(Native Method)
>          at java.net.URLClassLoader.findClass(Unknown Source)
>          at java.lang.ClassLoader.loadClass(Unknown Source)
>          at java.lang.ClassLoader.loadClass(Unknown Source)
>          at java.lang.ClassLoader.loadClassInternal(Unknown Source)
>          at java.lang.Class.forName0(Native Method)
>          at java.lang.Class.forName(Unknown Source)
>          at sun.rmi.server.LoaderHandler.loadClass(Unknown Source)
>          at sun.rmi.server.LoaderHandler.loadClass(Unknown Source)
>          at java.rmi.server.RMIClassLoader$2.loadClass(Unknown Source)
>          at java.rmi.server.RMIClassLoader.loadClass(Unknown Source)
>          at sun.rmi.server.MarshalInputStream.resolveClass(Unknown Source)
>          at java.io.ObjectInputStream.readNonProxyDesc(Unknown Source)
>          at java.io.ObjectInputStream.readClassDesc(Unknown Source)
>          at java.io.ObjectInputStream.readOrdinaryObject(Unknown Source)
>          at java.io.ObjectInputStream.readObject0(Unknown Source)
>          at java.io.ObjectInputStream.readObject(Unknown Source)
>          ... 9 more
>
>
>
>
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