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[protege-discussion] import classes from bioportal error
csongor.nyulas at stanford.edu
Tue Jan 31 12:22:59 PST 2012
Following up on this thread:
The fixes I talked about below were included in the recent Protege 3.4.8
release, so those who installed the latest Protege version should not
encounter problems with the Bioportal Import plugin.
On 12/9/2011 11:35 AM, Csongor Nyulas wrote:
> Hi Trish,
> I have made some fixes in the BP Import plugin, that I think solve the
> issues you have reported, at least those that we were able to
> reproduce together. However, I cannot guarantee that my fixes solve
> ALL the problems people have faced and have reported on the different
> Protege mailing lists (basically those problems that I could not
> reproduce I could not try to fix either).
> Could you (and anybody else who would be interested) please test the
> new version of the plugin? It would be very helpful for us to get
> feedback related to how the current fixes cover all the bugs, and it
> would help us to fix any outstanding issues before the upcoming
> Protege release.
> The new version of the plugin is available for download from the
> Protege wiki. Please follow the instructions at:
> On 11/14/2011 10:35 AM, Trish Whetzel wrote:
>> A few items I've noticed with the plugin are that after opening
>> Protege to start building a new ontology, if only the class owl:Thing
>> exists in the new ontology, the BioPortal panel opens and an ontology
>> to import from can be selected, however the left-hand side of the
>> panel remains empty. After one class is added, the tree hierarchy of
>> the imported ontology was visible. However I was not able to get the
>> plugin to work a second time. Also, when the tree hierarchy was
>> displayed, the root node terms could not be expanded using the arrow
>> icons, lower node terms could be expanded. A final item I noticed is
>> that some ontologies are listed as 'not explorable'.. why is this?
>> Testing with Mac (OS 10.6.8) and Protege 3.4.7.
>> protege-discussion mailing list
>> protege-discussion at lists.stanford.edu
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