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[protege-discussion] protege-discussion Digest, Vol 75, Issue 10

Ganesh kumar ganeshkumar1987 at gmail.com
Tue Oct 9 17:03:37 PDT 2012


Hi Timothy,

Thanks for your response.
I have decided to use mysql as my backend.

I have a new question like - After I create a new database project, I need
to open the same project from another location.
But in Open project menu, I do not see an option to open a project from
database.

Can you please help me to resolve this issue

Thanks in advance.

On Tue, Oct 9, 2012 at 6:14 AM, <
protege-discussion-request at lists.stanford.edu> wrote:

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> Today's Topics:
>
>    1. Re: integration of owl files reg (kala devi ramar)
>    2. Re: integration of owl files reg (Timothy Redmond)
>    3. Re: Protege 3.4.8 with oracle database backend (Timothy Redmond)
>    4. NCBO Webinar: Editing and Publishing OWL 2 and OBO ontologies
>       with WebProtege and BioPortal (Trish Whetzel)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Sun, 7 Oct 2012 20:46:08 -0700 (PDT)
> From: kala devi ramar <kala_ramar at yahoo.com>
> To: protege-discussion at lists.stanford.edu
> Subject: Re: [protege-discussion] integration of owl files reg
> Message-ID:
>         <1349667968.11531.YahooMailClassic at web162506.mail.bf1.yahoo.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
>
>
>
>
> Hello all,
> I have three owl files in protege.Weather.owl, plants.owl and
> fertilizer.owl. I want to integrate these files to get some inference. for
> example if temp >30c and humidity>60% and plant name="maize" then use
> xxxxxxxx fertilizer.
> Please help me how to do it.
> ?
> thank u
> ?
> R.kaladevi
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> ------------------------------
>
> Message: 2
> Date: Mon, 08 Oct 2012 06:58:20 -0700
> From: Timothy Redmond <tredmond at stanford.edu>
> To: protege-discussion at lists.stanford.edu
> Subject: Re: [protege-discussion] integration of owl files reg
> Message-ID: <5072DBFC.8010802 at stanford.edu>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
>
> Create a new ontology that imports all three ontologies and run the
> reasoner on that.  Both Protege 3 and Protege 4 have buttons for
> importing ontologies in their first tab (the Metadata tab and the Active
> Ontology tab respectively).  If you are interested in using inference, I
> would recommend Protege 4.
>
> -Timothy
>
>
> On 10/07/2012 08:46 PM, kala devi ramar wrote:
> >
> >
> >     Hello all,
> >     I have three owl files in protege.Weather.owl, plants.owl and
> >     fertilizer.owl. I want to integrate these files to get some
> >     inference. for example if temp >30c and humidity>60% and plant
> >     name="maize" then use xxxxxxxx fertilizer.
> >     Please help me how to do it.
> >     thank u
> >     R.kaladevi
> >
> >
> >
> > _______________________________________________
> > protege-discussion mailing list
> > protege-discussion at lists.stanford.edu
> > https://mailman.stanford.edu/mailman/listinfo/protege-discussion
> >
> > Instructions for unsubscribing:
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> ------------------------------
>
> Message: 3
> Date: Mon, 08 Oct 2012 07:19:07 -0700
> From: Timothy Redmond <tredmond at stanford.edu>
> To: protege-discussion at lists.stanford.edu
> Subject: Re: [protege-discussion] Protege 3.4.8 with oracle database
>         backend
> Message-ID: <5072E0DB.30108 at stanford.edu>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
>
> The Protege team has not supported the Oracle database for many years
> now.   There was a post some time ago (years?) where somebody supplied a
> patch which allowed Protege to work with Oracle.  But I did some google
> searches and didn't find the post in question.
>
> My recommendation would be to use either mysql or postgresql which are
> both tested nightly.
>
> -Timothy
>
>
> On 10/04/2012 02:32 PM, Ganesh kumar wrote:
> > Hi All,
> >
> > Does Anyone have or can share me the path where I can download this
> > version (3.4.8) of protege source code which works with oracle backend.
> >
> >
> > --
> > *Warm Regards
> > Ganesh Kumar S
> > 0064212388360
> > *
> >
> >
> > _______________________________________________
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> > protege-discussion at lists.stanford.edu
> > https://mailman.stanford.edu/mailman/listinfo/protege-discussion
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> ------------------------------
>
> Message: 4
> Date: Mon, 8 Oct 2012 10:14:32 -0700
> From: Trish Whetzel <plwhetzel at gmail.com>
> To: protege-discussion at lists.stanford.edu
> Subject: [protege-discussion] NCBO Webinar: Editing and Publishing OWL
>         2 and OBO ontologies with WebProtege and BioPortal
> Message-ID:
>         <CAE4f=nh=ecD7Xz66aQa4tW5M1hnSGYKs-aad8=5=_
> 1QkD3yKMA at mail.gmail.com>
> Content-Type: text/plain; charset="windows-1252"
>
> The next NCBO Webinar will be presented by Tania Tudorache and Matthew
> Horridge from Stanford University on "Editing and Publishing OWL 2 and OBO
> ontologies with WebProt?g? and BioPortal" at 10:00am PDT, Wednesday, Oct.
> 10.  Below is information on how to join the online meeting via WebEx and
> accompanying teleconference. For the full schedule of the NCBO Webinar
> presentations see: http://www.bioontology.org/webinar-series.
>
>
> ABSTRACT:
> WebProt?g? is a collaborative ontology and knowledge base editor for the
> Web.  In this talk, we will present the latest WebProt?g? developments,
> including support for the editing of OWL 2 and OBO ontologies, the new
> OWL-API backend and the the various collaboration features. We will
> describe how WebProt?g? can be customized as a domain-expert friendly tool
> and show the OBO specific user interface widgets that are optimized for
> editing components of OBO ontologies.  We will demonstrate how users can
> upload and download ontologies, share them with collaborators, and
> simultaneously edit and comment on them. All ontology changes are recorded,
> and can be inspected by editors, curators or reviewers.  We will also show
> how users can collaborate using the notes and discussions features, as well
> as the watches and notifications functionality.  Finally, we will
> demonstrate how WebProt?g? integrates with BioPortal services so that, for
> example, users can search for and reference terms in BioPortal ontologies
> at the click of a mouse.  We will conclude with our plans for the future
> development of WebProt?g? and its integration with BioPortal.
>
>
> SPEAKER BIOS:
> Tania Tudorache is a research scientist in the Stanford Center for
> Biomedical Informatics Research. Her main research interest is the
> collaborative development of ontologies applied to the biomedical domain.
> Dr. Tudorache has more than 9 years of experience with ontology development
> and Semantic Web technologies. She is also one of the key team member of
> the Prot?g? team. As a research scientist, Dr. Tudorache has done extensive
> work on the collaborative development of large biomedical terminologies and
> ontologies. She has also designed and implemented the initial versions of
> WebProt?g? ? a light-weight ontology and knowledge base editor for the Web.
> She is the lead person of the team developing the ICD Collaborative
> Authoring Tool (iCAT) - an adaptation of WebProt?g? that the World Heath
> Organization is currently using to build the 11th revision of the
> International Classification of Diseases. Dr. Tudorache has organized and
> chaired several international Semantic Web conferences, and has served as a
> program committee member on numerous occasions.
>
> Matthew Horridge is a research software developer in the Biomedical
> Informatics Research Group at Stanford University. He works on the Prot?g?
> project, developing front and back end components for both WebProt?g? and
> Prot?g? 4.  In addition to this, Matthew has worked extensively on the
> design and implementation of the OWL API, which is the most popular API for
> dealing with OWL ontologies and underpins the latest versions of WebProt?g?
> and Prot?g? 4.  His research interests centre around the explanation of
> entailments in ontologies and he recently received a PhD from the
> University of Manchester in this area.
>
>
> WEBEX DETAILS:
> -------------------------------------------------------
> To start or join the online meeting
> -------------------------------------------------------
> Go to
>
> https://stanford.webex.com/stanford/j.php?ED=205918092&UID=481527042&PW=NMmEyZWM0YTg1&RT=MiM0
>
> Meeting Number: 923 724 964
> Meeting Password: ncbo
>
>
> -------------------------------------------------------
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>
> Access code:923 724 964
>
>
>
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> http://www.bioontology.org
>
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> End of protege-discussion Digest, Vol 75, Issue 10
> **************************************************
>



-- 
*Warm Regards
Ganesh Kumar S
0064212388360
*
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