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[protege-discussion] integration of owl files reg

kala devi ramar kala_ramar at yahoo.com
Tue Oct 16 02:06:00 PDT 2012


Dear Mr.Timothy
Thank u so much for your help. In a single owl file i have imported other owl files.
 
R.kaladevi

--- On Mon, 10/8/12, protege-discussion-request at lists.stanford.edu <protege-discussion-request at lists.stanford.edu> wrote:


From: protege-discussion-request at lists.stanford.edu <protege-discussion-request at lists.stanford.edu>
Subject: protege-discussion Digest, Vol 75, Issue 10
To: protege-discussion at lists.stanford.edu
Date: Monday, October 8, 2012, 10:44 PM


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Today's Topics:

   1. Re: integration of owl files reg (kala devi ramar)
   2. Re: integration of owl files reg (Timothy Redmond)
   3. Re: Protege 3.4.8 with oracle database backend (Timothy Redmond)
   4. NCBO Webinar: Editing and Publishing OWL 2 and OBO ontologies
      with WebProtege and BioPortal (Trish Whetzel)


----------------------------------------------------------------------

Message: 1
Date: Sun, 7 Oct 2012 20:46:08 -0700 (PDT)
From: kala devi ramar <kala_ramar at yahoo.com>
To: protege-discussion at lists.stanford.edu
Subject: Re: [protege-discussion] integration of owl files reg
Message-ID:
    <1349667968.11531.YahooMailClassic at web162506.mail.bf1.yahoo.com>
Content-Type: text/plain; charset="iso-8859-1"





Hello all,
I have three owl files in protege.Weather.owl, plants.owl and fertilizer.owl. I want to integrate these files to get some inference. for example if temp >30c and humidity>60% and plant name="maize" then use xxxxxxxx fertilizer.
Please help me how to do it.
?
thank u 
?
R.kaladevi
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Message: 2
Date: Mon, 08 Oct 2012 06:58:20 -0700
From: Timothy Redmond <tredmond at stanford.edu>
To: protege-discussion at lists.stanford.edu
Subject: Re: [protege-discussion] integration of owl files reg
Message-ID: <5072DBFC.8010802 at stanford.edu>
Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"


Create a new ontology that imports all three ontologies and run the 
reasoner on that.  Both Protege 3 and Protege 4 have buttons for 
importing ontologies in their first tab (the Metadata tab and the Active 
Ontology tab respectively).  If you are interested in using inference, I 
would recommend Protege 4.

-Timothy


On 10/07/2012 08:46 PM, kala devi ramar wrote:
>
>
>     Hello all,
>     I have three owl files in protege.Weather.owl, plants.owl and
>     fertilizer.owl. I want to integrate these files to get some
>     inference. for example if temp >30c and humidity>60% and plant
>     name="maize" then use xxxxxxxx fertilizer.
>     Please help me how to do it.
>     thank u
>     R.kaladevi
>
>
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
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> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03

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Message: 3
Date: Mon, 08 Oct 2012 07:19:07 -0700
From: Timothy Redmond <tredmond at stanford.edu>
To: protege-discussion at lists.stanford.edu
Subject: Re: [protege-discussion] Protege 3.4.8 with oracle database
    backend
Message-ID: <5072E0DB.30108 at stanford.edu>
Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"


The Protege team has not supported the Oracle database for many years 
now.   There was a post some time ago (years?) where somebody supplied a 
patch which allowed Protege to work with Oracle.  But I did some google 
searches and didn't find the post in question.

My recommendation would be to use either mysql or postgresql which are 
both tested nightly.

-Timothy


On 10/04/2012 02:32 PM, Ganesh kumar wrote:
> Hi All,
>
> Does Anyone have or can share me the path where I can download this 
> version (3.4.8) of protege source code which works with oracle backend.
>
>
> -- 
> *Warm Regards
> Ganesh Kumar S
> 0064212388360
> *
>
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
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> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03

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Message: 4
Date: Mon, 8 Oct 2012 10:14:32 -0700
From: Trish Whetzel <plwhetzel at gmail.com>
To: protege-discussion at lists.stanford.edu
Subject: [protege-discussion] NCBO Webinar: Editing and Publishing OWL
    2 and OBO ontologies with WebProtege and BioPortal
Message-ID:
    <CAE4f=nh=ecD7Xz66aQa4tW5M1hnSGYKs-aad8=5=_1QkD3yKMA at mail.gmail.com>
Content-Type: text/plain; charset="windows-1252"

The next NCBO Webinar will be presented by Tania Tudorache and Matthew
Horridge from Stanford University on "Editing and Publishing OWL 2 and OBO
ontologies with WebProt?g? and BioPortal" at 10:00am PDT, Wednesday, Oct.
10.  Below is information on how to join the online meeting via WebEx and
accompanying teleconference. For the full schedule of the NCBO Webinar
presentations see: http://www.bioontology.org/webinar-series.


ABSTRACT:
WebProt?g? is a collaborative ontology and knowledge base editor for the
Web.  In this talk, we will present the latest WebProt?g? developments,
including support for the editing of OWL 2 and OBO ontologies, the new
OWL-API backend and the the various collaboration features. We will
describe how WebProt?g? can be customized as a domain-expert friendly tool
and show the OBO specific user interface widgets that are optimized for
editing components of OBO ontologies.  We will demonstrate how users can
upload and download ontologies, share them with collaborators, and
simultaneously edit and comment on them. All ontology changes are recorded,
and can be inspected by editors, curators or reviewers.  We will also show
how users can collaborate using the notes and discussions features, as well
as the watches and notifications functionality.  Finally, we will
demonstrate how WebProt?g? integrates with BioPortal services so that, for
example, users can search for and reference terms in BioPortal ontologies
at the click of a mouse.  We will conclude with our plans for the future
development of WebProt?g? and its integration with BioPortal.


SPEAKER BIOS:
Tania Tudorache is a research scientist in the Stanford Center for
Biomedical Informatics Research. Her main research interest is the
collaborative development of ontologies applied to the biomedical domain.
Dr. Tudorache has more than 9 years of experience with ontology development
and Semantic Web technologies. She is also one of the key team member of
the Prot?g? team. As a research scientist, Dr. Tudorache has done extensive
work on the collaborative development of large biomedical terminologies and
ontologies. She has also designed and implemented the initial versions of
WebProt?g? ? a light-weight ontology and knowledge base editor for the Web.
She is the lead person of the team developing the ICD Collaborative
Authoring Tool (iCAT) - an adaptation of WebProt?g? that the World Heath
Organization is currently using to build the 11th revision of the
International Classification of Diseases. Dr. Tudorache has organized and
chaired several international Semantic Web conferences, and has served as a
program committee member on numerous occasions.

Matthew Horridge is a research software developer in the Biomedical
Informatics Research Group at Stanford University. He works on the Prot?g?
project, developing front and back end components for both WebProt?g? and
Prot?g? 4.  In addition to this, Matthew has worked extensively on the
design and implementation of the OWL API, which is the most popular API for
dealing with OWL ontologies and underpins the latest versions of WebProt?g?
and Prot?g? 4.  His research interests centre around the explanation of
entailments in ontologies and he recently received a PhD from the
University of Manchester in this area.


WEBEX DETAILS:
-------------------------------------------------------
To start or join the online meeting
-------------------------------------------------------
Go to
https://stanford.webex.com/stanford/j.php?ED=205918092&UID=481527042&PW=NMmEyZWM0YTg1&RT=MiM0

Meeting Number: 923 724 964
Meeting Password: ncbo


-------------------------------------------------------
Audio conference information
-------------------------------------------------------
To receive a call back, provide your phone number when you join the
meeting, or call the number below and enter the access code.

Call-in toll number (US/Canada): 1-650-429-3300

Global call-in numbers:
https://stanford.webex.com/stanford/globalcallin.php?serviceType=MC&ED=205918092&tollFree=0


Access code:923 724 964



Trish Whetzel, PhD
Outreach Coordinator
The National Center for Biomedical Ontology
Ph: 650-721-2378
http://www.bioontology.org

"Like" NCBO on Facebook: http://on.fb.me/bioontology

Follow NCBO on Twitter: http://twitter.com/#!/bioontology

Join in Discussions on LinkedIn: http://linkd.in/ncbo-group
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