Search Mailing List Archives
[protege-discussion] Update of the MySQL backend database (Csongor Nyulas)
Eddy.VANDERLINDEN at ext.ec.europa.eu
Eddy.VANDERLINDEN at ext.ec.europa.eu
Thu Apr 25 23:24:18 PDT 2013
Hi Csongor,
MappingMaster is really great and works fine for my purpose!
Some small hints I would like to share which took me some trials to find out:
- if more than one Facts: or Annotations: attributes are entered, they need to be separated by a comma (,)
- if Facts: and Annotations: need to be entered, they need to be entered in 2 separate descriptions.
Further the tutorials on DSL and GUI of the MappingMaster were of great help.
Thanks a lot for all that (also for the DataMaster)!!
Best regards
Eddy
-----Original Message-----
From: protege-discussion-bounces at lists.stanford.edu [mailto:protege-discussion-bounces at lists.stanford.edu] On Behalf Of protege-discussion-request at lists.stanford.edu
Sent: Thursday, April 25, 2013 9:05 PM
To: protege-discussion at lists.stanford.edu
Subject: protege-discussion Digest, Vol 81, Issue 27
Send protege-discussion mailing list submissions to
protege-discussion at lists.stanford.edu
To subscribe or unsubscribe via the World Wide Web, visit
https://mailman.stanford.edu/mailman/listinfo/protege-discussion
or, via email, send a message with subject or body 'help' to
protege-discussion-request at lists.stanford.edu
You can reach the person managing the list at
protege-discussion-owner at lists.stanford.edu
When replying, please edit your Subject line so it is more specific
than "Re: Contents of protege-discussion digest..."
Today's Topics:
1. Re: Update of the MySQL backend database (Csongor Nyulas)
(Csongor Nyulas)
2. Plugin development in 4.1 (Uri Shani)
3. Cfp - 1st International Workshop on Data Mining on Linked
Data (DMoLD'13) with Linked Data Mining Challenge @ ECML/PKDD
(Claudia d'Amato)
----------------------------------------------------------------------
Message: 1
Date: Wed, 24 Apr 2013 14:47:02 -0700
From: Csongor Nyulas <csongor.nyulas at stanford.edu>
To: protege-discussion at lists.stanford.edu
Subject: Re: [protege-discussion] Update of the MySQL backend database
(Csongor Nyulas)
Message-ID: <517852D6.6010809 at stanford.edu>
Content-Type: text/plain; charset=windows-1252; format=flowed
Hi Eddy,
You should definitely try out DataMaster [1] and MappingMaster [2]. Both
should work with Protege 3.4.8 and later.
In DataMaster, class names and individual URIs are created automatically
based on a pattern that ensure unique names based on the imported data
source. If the class/individual URIs are important to you, you can
rename them later in another process. DataMaster works with any database
that has a JDBC driver, and with anything that can be served as an ODBC
data source (such as CSV and text files).
MappingMaster works with Excel spread sheets, and has a very powerful
mapping language that allows you to manipulate your input data, and it
also allows you to specify how the created class/instance names should
be generated based on the source content.
Another good alternative would be to write a small Java application
using the Protege OWL API [3] that would do the import. In that case you
would have the freedom to do custom processing of the data prior to
import, and you could reuse the application in the future.
Csongor
[1] http://protegewiki.stanford.edu/wiki/DataMaster
[2] http://protege.cim3.net/cgi-bin/wiki.pl?MappingMaster
[3] http://protegewiki.stanford.edu/wiki/ProtegeOWL_API_Programmers_Guide
On 04/23/2013 11:15 PM, Eddy.VANDERLINDEN at ext.ec.europa.eu wrote:
> Hi Csongor,
>
> Thanks a lot for your advice.
>
> What I try to do is uploading new individuals, some hundreds.
>
> Configuring the Data master tab in Prot?g? 3.4.8 might help perhaps.
> I'm not sure if the tab supports 3.4.8 and as far as I remembered, new classes were created automatically based on the tab name of the Excel sheet.
> The direct import in MySQL seemed a swift alternative but, I would appreciate your advice for any alternative you judge better.
> The import may be from .CSV files too.
>
> Thanks in advance.
>
> Kind regards - Meilleures salutations - Mit freundlichen Gr?ssen - Met vriendelijke groeten
>
> Eddy Vanderlinden
>
> -------------
> DIGIT Unit 01, Brussels
> MIA - Methodologies, Interoperability and Architectures
> Tel.: +32 2 295 26 64
> -----Original Message-----
> From: protege-discussion-bounces at lists.stanford.edu [mailto:protege-discussion-bounces at lists.stanford.edu] On Behalf Of protege-discussion-request at lists.stanford.edu
> Sent: Tuesday, April 23, 2013 9:04 PM
> To: protege-discussion at lists.stanford.edu
> Subject: protege-discussion Digest, Vol 81, Issue 25
>
> Send protege-discussion mailing list submissions to
> protege-discussion at lists.stanford.edu
>
> To subscribe or unsubscribe via the World Wide Web, visit
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
> or, via email, send a message with subject or body 'help' to
> protege-discussion-request at lists.stanford.edu
>
> You can reach the person managing the list at
> protege-discussion-owner at lists.stanford.edu
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of protege-discussion digest..."
>
>
> Today's Topics:
>
> 1. Re: Update of the MySQL backend database (Csongor Nyulas)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 23 Apr 2013 11:09:15 -0700
> From: Csongor Nyulas <csongor.nyulas at stanford.edu>
> To: protege-discussion at lists.stanford.edu
> Subject: Re: [protege-discussion] Update of the MySQL backend database
> Message-ID: <5176CE4B.1020003 at stanford.edu>
> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>
> Hi Eddy,
>
> The Protege 3 database back-end is not meant to be edited directly
> (through SQL updates or Excel or anything). The adding of new
> information (new rows) is an especially bad idea, since it is very easy
> to break things.
> The Protege back-end is NOT a triple store, but rather a "proprietary"
> storage format developed originally for frames ontologies, and later
> adapted to be used to store OWL ontologies.
>
> You should use the Protege/WebProtege client or the Protege API to
> modify the content of your ontology.
>
> If you explain what you try to achieve, maybe we can provide even more
> specific advise.
>
> Regards,
> Csongor
>
>
> On 04/23/2013 02:15 AM, Eddy.VANDERLINDEN at ext.ec.europa.eu wrote:
>> Hello,
>> MS Excel offers in the 2010 version a nice feature.
>> When we have the MySQL workbench installed on the same PC, there is a
>> connection possible from Excel to MySQL.
>> This is accessible through the button as shown hereby .
>> We can retrieve and update information in the spreadsheet.
>> The possibility to upload triples is available too.
>> However, when we do so, they do not appear in the ontology (updates of
>> existing triples do).
>> We are using Prot?g? 3.4.8 with Webprot?g? 1 as user interface, the
>> collaborative version in the background does not show the new triples
>> neither.
>> An example of the uploaded data in the spreadsheet is shown here:
>> *frame* *frame_type* *slot* *facet* *is_template* *value_index*
>> *value_type* *short_value* *long_value*
>> ArisDiagram 25 :DIRECT-TYPE
>> 0 1 9 http://ec.europa.eu/ontologies/EC_Glossary.owl#EC_Concept
>> http://ec.europa.eu/ontologies/EC_Glossary.owl#EC_Concept 9
>> :DIRECT-INSTANCES
>> 0 206 25 ArisDiagram
>> ArisDiagram 25 :NAME
>> 0 0 3 ArisDiagram
>> ArisDiagram 25 http://www.w3.org/1999/02/22-rdf-syntax-ns#type
>> 0 0 9 http://ec.europa.eu/ontologies/EC_Glossary.owl#EC_Concept
>> ArisDiagram 25 http://www.w3.org/2004/02/skos/core#prefLabel
>> 0 0 3 Aris diagram
>>
>> Is there anything we are missing here to make this function?
>> Thanks in advance.
>> Kind regards
>> Eddy Vanderlinden
>> -------------
>> DIGIT Unit 01, Brussels
>> MIA - Methodologies, Interoperability and Architectures
>> Tel.: +32 2 295 26 64
>>
>>
>> _______________________________________________
>> protege-discussion mailing list
>> protege-discussion at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>>
>> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20130423/d42eafc9/attachment-0001.html>
> -------------- next part --------------
> A non-text attachment was scrubbed...
> Name: not available
> Type: image/jpeg
> Size: 2600 bytes
> Desc: not available
> URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20130423/d42eafc9/attachment-0001.jpe>
>
> ------------------------------
>
> _______________________________________________
> protege-discussion mailing list
> protege-discussion at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
>
> End of protege-discussion Digest, Vol 81, Issue 25
> **************************************************
> _______________________________________________
> protege-discussion mailing list
> protege-discussion at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-discussion
>
> Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03
------------------------------
Message: 2
Date: Thu, 25 Apr 2013 10:27:58 +0300
From: Uri Shani <SHANI at il.ibm.com>
To: protege-discussion at lists.stanford.edu
Subject: [protege-discussion] Plugin development in 4.1
Message-ID:
<OF5BFCA621.844A03F5-ONC2257B58.00289A1B-C2257B58.0029071E at il.ibm.com>
Content-Type: text/plain; charset="us-ascii"
Well, I have figured it out by myself after hacking around in all possible
directions.
Seems that the tabs are initialized and shown only if enabled in the
Preferences, so it turned out the Preferences have discovered my new
plugin and once Protege opened and I checked the label of the new plugin,
the tab appeared as well on the tabs row.
Still - I could not find where the extension points are documented so that
the time I spent to discover that wisdom can be saved...
Thanks,
- Uri
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20130425/1f8e1e53/attachment-0001.html>
------------------------------
Message: 3
Date: Thu, 25 Apr 2013 18:41:40 +0200
From: Claudia d'Amato <claudia.damato at uniba.it>
To: destinatari-ignoti:;
Subject: [protege-discussion] Cfp - 1st International Workshop on Data
Mining on Linked Data (DMoLD'13) with Linked Data Mining Challenge @
ECML/PKDD
Message-ID: <51795CC4.5040304 at uniba.it>
Content-Type: text/plain; charset="iso-8859-15"; Format="flowed"
[Apologies for multiple postings]
---------------------------------------------------------------------------------
Call for Papers
for
Data Mining on Linked Data (DMoLD'13) workshop
with Linked Data Mining Challenge
---------------------------------------------------------------------------------
To be held during the European Conference on Machine Learning and
Principles and Practice of Knowledge Discovery in Databases, ECML/PKDD 2013,
23-27 September 2013 Prague, Czech Republic (http://www.ecmlpkdd2013.org/)
The workshop consists of an Open Track and of a Challenge Track.
The Open Track will expect submission of regular research papers, describing
novel approaches to applying Data Mining techniques on the Linked Data sources.
Participation in the Challenge Track will require the participants to download a
real-world RDF dataset from the domain of Public Contract Procurement, and
accomplish at least one of the three pre-defined tasks on it using their own or
publicly available data mining tool.
IMPORTANT DATES:
* May 1, 2013 - Challenge Track data for Task 1 and Task 3
* May 15, 2013 - Challenge Track data for Task 2
* June 21, 2013 - Deadline for Challenge Track results
* June 28, 2013 - Deadline for paper submissions (both Open Track and of a Challenge Track)
For more info about the Challenge, visit
http://keg.vse.cz/dmold2013
For more info about the ECML/PKDD 2013, visit
http://www.ecmlpkdd2013.org
Claudia d'?Amato, Petr Berka, Vojtech Svatek & Krzysztof Wecel
Workshop organizers
-------------- next part --------------
A non-text attachment was scrubbed...
Name: claudia_damato.vcf
Type: text/x-vcard
Size: 331 bytes
Desc: not available
URL: <http://mailman.stanford.edu/pipermail/protege-discussion/attachments/20130425/ec2a3628/attachment-0001.vcf>
------------------------------
_______________________________________________
protege-discussion mailing list
protege-discussion at lists.stanford.edu
https://mailman.stanford.edu/mailman/listinfo/protege-discussion
End of protege-discussion Digest, Vol 81, Issue 27
**************************************************
More information about the protege-discussion
mailing list