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[protege-owl] Problem with SWRLTab in Protege 3.3.1 and 3.4 beta

Lorne Bouchard lorne.bouchard at gmail.com
Wed Jan 9 13:27:33 PST 2008


Hi there,

I have recently been trying to use the SWRLTab in Protege 3.3.1 and 3.4 beta
and in both cases I get the same Java runtime error.
Below you will find the log of a session, during which I create a new
project from the file " family.swrl.owl.xml" which was downloaded from the
Stanford sample ontology site. I also get the same error with the "
daycare.swrl.owl" file which is referenced on the same site (the file was
downloaded from the University of Wisconsin site).

I am using the "Jess Version 7.0b6 3/13/2006" jar file which is stored in
owl plugins directory.

Have I missed something or am I doing something wrong?

Thanks for your help.

Cheers!

- Lorne

---------------------------------------------------
Lorne H. Bouchard
Professeur associé
Département d'informatique
Université du Québec à Montréal

tél.: (514)-488-5226
mél : Bouchard.Lorne_H at uqam.ca
        Lorne.Bouchard at gmail.com

"May the source always be with you,
 even if some assembly is required."

------------------------------------------------------------------------------------------------------------

cwd: C:\Program Files\Protege_3.4_beta\
cmd: "C:\Program Files\Protege_3.4_beta\jre\bin\java.exe" -Xms209715200
-Xmx209715200 -classpath "C:\Prog
ram Files\Protege_3.4_beta\protege.jar;C:\Program
Files\Protege_3.4_beta\looks- 2.1.3.jar;C:\Program Files
\Protege_3.4_beta\unicode_panel.jar;C:\Program
Files\Protege_3.4_beta\driver.jar;C:\Program Files\Protege
_3.4_beta\driver0.jar;C:\Program
Files\Protege_3.4_beta\driver1.jar;C:\Program Files\Protege_3.4_beta\dri
ver2.jar;C:\Program
Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.changes\change-
model.jar;C:\
Program Files\Protege_3.4_beta\lax.jar;" com.zerog.lax.LAX "C:/Program
Files/Protege_3.4_beta/Protege.lax
" "C:/Documents and Settings/lhb/Local Settings/Temp/lax25.tmp"
CONFIG: Protege 3.4 Build 125, JVM 1.5.0_11-b03, memory=208M, Windows XP,
encoding=UTF-8, language=en, co
untry=CA
CONFIG: Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin
CONFIG: Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya
CONFIG: Loaded plugin dfki.protege.ontoviz
CONFIG: Loaded plugin edu.stanford.smi.protegex.rdf_backend - RDF Backend
CONFIG: Loaded plugin edu.stanford.smi.protegex.changes - Changes tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.chatPlugin
CONFIG: Loaded plugin edu.stanford.smi.protege.collab - Collaborative
Protege
CONFIG: Loaded plugin edu.stanford.smi.protege.script - Script Plugin
CONFIG: Loaded plugin edu.stanford.smi.protegex.standard_extensions - Graph
Widget, Table Widget
CONFIG: Loaded plugin edu.stanford.smi.protege.stringsearch - String Search
Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.datamaster - DataMaster Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs
CONFIG: Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.facets_tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.instance_tree
CONFIG: Loaded plugin edu.stanford.smi.protegex.owl.inference.pellet -
Protege Pellet Reasoner
CONFIG: Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab
CONFIG: Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab
CONFIG: Loaded plugin org.algernon - Algernon
CONFIG: Loaded plugin se.liu.ida.JessTab - JessTab Plugin
CONFIG: Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.debugger
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owldoc
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlviz
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic Wizards
CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL
Wizards
WARNING: [Repository Manager] Could not find repository file:
file:/C:/Documents%20and%20Settings/lhb/Des
ktop/Semantic%20web%20tutorial%20MCETECH'08/family.swrl.owl.repository --
RepositoryFileManager.loadRepos
itoriesFromURI()
INFO: Loading triples
INFO: Start processing ontology:
file:/C:/Documents%20and%20Settings/lhb/Desktop/Semantic%20web%20tutoria
l%20MCETECH'08/family.swrl.owl.xml Time: Wed Jan 09 11:15:03 EST 2008
INFO: [ProtegeOWLParser] Importing http://www.w3.org/2003/11/swrl (from
C:\Program Files\Protege_3.4_beta
\plugins\edu.stanford.smi.protegex.owl\swrl.owl)
WARNING: [ProtegeOWLParser] Warning: Ignoring namespace prefix "ruleml" for
existing prefix "swrl" -- Def
aultProtegeOWLParserLogger.logWarning ()
INFO: [ProtegeOWLParser] Importing http://www.w3.org/2003/11/swrlb (from
C:\Program Files\Protege_3.4_bet
a\plugins\edu.stanford.smi.protegex.owl\swrlb.owl)
INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/3.3/swrla.owl (from C:\Program Fil
es\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\swrla.owl)
INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal.owl (from C
:\Program
Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\temporal.owl)
INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl (from C:\Pr
ogram Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\abox.owl)

INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl (from C:\Pr
ogram Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\tbox.owl)

INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.owl (from C:\P
rogram
Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\swrlx.owl)
INFO: [ProtegeOWLParser] Importing
http://swrl.stanford.edu/ontologies/built-ins/3.3/query.owl (from C:\P
rogram
Files\Protege_3.4_beta\plugins\edu.stanford.smi.protegex.owl\query.owl)
INFO: [ProtegeOWLParser] Completed triple loading after 1266 ms
INFO: [TripleChangePostProcessor] Completed lists after 0 ms
INFO: [TripleChangePostProcessor] Completed anonymous classes after 16 ms
INFO: [TripleChangePostProcessor] Completed deprecated classes after 0 ms
INFO: [TripleChangePostProcessor] Completed properties after 31 ms
INFO: [TripleChangePostProcessor] Completed named classes after 31 ms
INFO: ... Loading completed after 1703 ms
Rule engine 'SWRLJessBridge' registered with the SWRLTab bridge.
Plugin 'SWRLJessTab' registered with the SWRLTab plugin manager.
Plugin 'SQWRLQueryTab' registered with the SWRLTab plugin manager.
Protege Wizards v1.0 beta build 14
Loaded OWL wizards library
WARNING: Exception caught by default exception handler --
java.lang.NoSuchMethodError: jess.Rete.removeFa
cts(Ljava/lang/String;)V
        at
edu.stanford.smi.protegex.owl.swrl.bridge.jess.SWRLJessBridge.defineRule (
SWRLJessBridge.java:1
02)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngineBridge.exportSWRLRule
(Unk
nown Source)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngineBridge.exportSWRLRules(Un
known Source)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngineBridge.exportSWRLRulesAnd
OWLKnowledge(Unknown Source)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngineBridge.importSWRLRulesAnd
OWLKnowledge(Unknown Source)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngineBridge.importSWRLRulesAnd
OWLKnowledge(Unknown Source)
        at
edu.stanford.smi.protegex.owl.swrl.bridge.jess.ui.JessControlPanel$ImportActionListener.action
Performed(JessControlPanel.java:130)
        at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
        at javax.swing.AbstractButton$Handler.actionPerformed(Unknown
Source)
        at javax.swing.DefaultButtonModel.fireActionPerformed (Unknown
Source)
        at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
        at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown
Source)
        at java.awt.AWTEventMulticaster.mouseReleased (Unknown Source)
        at java.awt.Component.processMouseEvent(Unknown Source)
        at javax.swing.JComponent.processMouseEvent(Unknown Source)
        at java.awt.Component.processEvent(Unknown Source)
        at java.awt.Container.processEvent(Unknown Source)
        at java.awt.Component.dispatchEventImpl(Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent (Unknown Source)
        at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
        at java.awt.LightweightDispatcher.dispatchEvent (Unknown Source)
        at java.awt.Container.dispatchEventImpl(Unknown Source)
        at java.awt.Window.dispatchEventImpl(Unknown Source)
        at java.awt.Component.dispatchEvent(Unknown Source)
        at java.awt.EventQueue.dispatchEvent(Unknown Source)
        at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown
Source)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown
Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
        at java.awt.EventDispatchThread.run(Unknown Source)
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