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[protege-owl] OWL-S Tab problem

Surya Bahadur Kathayat skathayat at hotmail.com
Fri Jan 11 02:25:59 PST 2008


Hi,

With Poetege 3.3.1, I am trying to use OWL-S Editor. After installing the OWL-S plugin, when I go to the project option and then configure and then check the owlstab...than new tap appears but with red dot in the center. There is nothing in the tab. When I checked the log file, it shows as below message. Somebody have idea about it ???


2008.01.11 11:12:51.343 CET WARNING: java.lang.ClassCastException: edu.stanford.smi.protege.model.DefaultKnowledgeBase
    at com.sri.owlseditor.Owlstab.initialize(Owlstab.java:118)
    at edu.stanford.smi.protege.widget.WidgetUtilities.createTabWidget(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectView.addTab(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectView.addEnabledTabs(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectView.synchronizeTabbedPane(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectView.reloadPartial(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectView.reload(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectManager.reloadUI(Unknown Source)
    at edu.stanford.smi.protege.ui.ProjectManager.configureProjectRequest(Unknown Source)
    at edu.stanford.smi.protege.action.ConfigureProject.actionPerformed(Unknown Source)
    at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
    at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
    at javax.swing.AbstractButton.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown Source)
    at java.awt.Component.processMouseEvent(Unknown Source)
    at javax.swing.JComponent.processMouseEvent(Unknown Source)
    at java.awt.Component.processEvent(Unknown Source)
    at java.awt.Container.processEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Window.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)

 


---
Surya Bahadur Kathayat
 
Research Fellow/PhD Candidate
Norwegian University of Science and Technology (NTNU)
Department of Telematics(ITEM)

 

Office Room No. 160.

NTNU, Computer and Information Science Department (IDI)

Trondheim , Norway


Office Tel. +47 73550438

Mobile No. +47 46392873

E-mail: surya at item.ntnu.no
Blog: www.kathayat.wordpress.com





> From: protege-owl-request at lists.stanford.edu
> Subject: protege-owl Digest, Vol 17, Issue 121
> To: protege-owl at lists.stanford.edu
> Date: Fri, 28 Dec 2007 18:32:56 -0800
> 
> Send protege-owl mailing list submissions to
> 	protege-owl at lists.stanford.edu
> 
> To subscribe or unsubscribe via the World Wide Web, visit
> 	https://mailman.stanford.edu/mailman/listinfo/protege-owl
> or, via email, send a message with subject or body 'help' to
> 	protege-owl-request at lists.stanford.edu
> 
> You can reach the person managing the list at
> 	protege-owl-owner at lists.stanford.edu
> 
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of protege-owl digest..."
> 
> 
> Today's Topics:
> 
>    1. Re: disabling log and OutOfMemoryError: SWRL	rules	processing
>       (Thusitha Mabotuwana)
>    2. Re: Exception on SWRL Query (correction) (Martin O'Connor)
>    3. SWRL owl files not found (Ely Edison Matos)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Sat, 29 Dec 2007 10:08:09 +1300
> From: Thusitha Mabotuwana <thusitha at cs.auckland.ac.nz>
> Subject: Re: [protege-owl] disabling log and OutOfMemoryError: SWRL
> 	rules	processing
> To: protege-owl at lists.stanford.edu
> Message-ID:
> 	<20071229100809.9kdmaep4goggkkos at webmail.cs.auckland.ac.nz>
> Content-Type: text/plain;	charset=ISO-8859-1;	format="flowed"
> 
> There's probably a better answer, but anyway, here's something you can do:
> 
> 1. Have a mylogging.properties in your project and set:
> -Djava.util.logging.config.file=path/mylogging.properties when running 
> Java. If
> you're using eclipse, you can do this using the run dialog where you can do
> something like:
> -Djava.util.logging.config.file=${workspace_loc:\path\mylogging.properties} so
> that it's always relative to your project path. Of course you can use fixed
> path too, but I prefer using relative path cos I tend to work on 2 machines.
> 
> What you can do is find the default logging.properties in C:\Program
> Files\Java\jre1.6.0_03\lib (or wherever you've got Java installed) and copy
> this to your project folder and then rename it. Then find the line that says:
> java.util.logging.ConsoleHandler.level = INFO and change it to:
> java.util.logging.ConsoleHandler.level = OFF.
> 
> This should turn off all logging msgs. If you want localized logging, for your
> own debugging purposes, you should be able to set this on/off on a class basis
> as well..A bit of googling should explain how to do this.
> 
> 2. From the trace you've pasted, CONFIG: Protege 3.4 Build 122, JVM
> 1.6.0_02-b06, memory=66M, it seems like you're using the default 66M 
> heap size.
> http://www.nabble.com/Max-size-of-an-ontology-tt14141872.html#a14164016 is a
> link that tells you how to increase this. Seems like you're using eclipse, and
> in this case it's just a matter of doing:
> -Xmx256M in the Run Dialog and passing the JVM arguments.
> 
> 
> 
> 
> 
> Quoting zhang weishan <dr_zhangws at yahoo.com>:
> 
> >
> >
> >
> > Dear all,
> >    I want to measure the performance of an owl/swrl application, i 
> > have two questions:
> >    1. how to disable the showing the followed info, which should slow 
> > down the performance.
> >    2. I have one class that load some SWRL and start processing, is 
> > it good to
> >  instantiate another class which is used to  process other SWRL 
> > rules? I got the out of memory error.
> >
> >    Best regards,
> >    Weishan
> >
> > ( Why always went to spam, resent)
> >
> > CONFIG: Protege 3.4 Build 122, JVM 1.6.0_02-b06, memory=66M, Windows 
> > Vista, encoding=UTF-8, language=en, country=US
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.conditions.ConditionsWidget --
> >  PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.ResourceListWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.domain.OWLDomainWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.database.OWLDatabaseKnowledgeBaseFactory -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.cls.ClassAnnotationsAndDescriptionWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.storage.ProtegeFromOWLFilesCreateProjectPlugin 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadatatab.OWLMetadataTab -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.MultiResourceWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate
> >  plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadatatab.OntologyURIWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.OWLDateTimeWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadatatab.OWLNamespacesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.MultiLiteralWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.swrl.ui.SWRLProjectPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.export.JenaTurtleFileExportPlugin 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.OWLPropertiesTab --
> >  PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.cls.OWLClassesTab -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.JenaKnowledgeBaseFactory -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.importer.JenaImportPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.range.OWLRangeWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.conditions.AssertedConditionsWidget 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.export.JenaExportPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.conditions.InferredConditionsWidget 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin:
> >  
> > edu.stanford.smi.protegex.owl.ui.properties.types.OWLDatatypePropertyTypesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.types.RDFPropertyTypesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.clsdesc.DisjointClassesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.export.JenaN3FileExportPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.SingleResourceWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.export.JenaNTripleFileExportPlugin 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadata.AnnotationsWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.OWLTimeWidget
> >  -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.OWLInversePropertyWidget 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseProjectPlugin 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.cls.ClassTypeConverterWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.ClassFormWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadata.OWLMetadataWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.swrl.ui.tab.SWRLTab -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.RDFSSubClassOfWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin:
> >  edu.stanford.smi.protegex.owl.ui.widget.RDFListWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadata.RDFSNamedClassMetadataWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.individuals.OWLIndividualsTab -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.OWLDateWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.cls.SwitchableClassDefinitionWidget 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.DataRangeFieldWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.RDFPropertiesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.properties.types.OWLObjectPropertyTypesWidget 
> > --
> >  PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.OWLFormsTab -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.swrl.ui.widget.SWRLRuleSlotWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.database.CreateOWLDatabaseFromFileProjectPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.InferredSuperClassesWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.SingleLiteralAreaWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.menu.OWLMenuProjectPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.clsproperties.PropertyRestrictionsTreeWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin:
> >  edu.stanford.smi.protegex.owl.ui.widget.HeaderWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.jena.OWLFilesCreateProjectPlugin -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.OWLFormWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadatatab.alldifferent.AllDifferentWidget 
> > -- PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.metadata.NameDocumentationWidget -- 
> > PluginUtilities.checkPlugin()
> > WARNING: Duplicate plugin: 
> > edu.stanford.smi.protegex.owl.ui.widget.ExternalResourceURLWidget -- 
> > PluginUtilities.checkPlugin()
> > CONFIG: Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya
> > CONFIG: Loaded plugin dfki.protege.ontoviz
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.rdf_backend
> >  - RDF
> >  Backend
> > CONFIG: Loaded plugin
> >  edu.stanford.smi.protegex.changes - Changes tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.chatPlugin
> > CONFIG: Loaded plugin edu.stanford.smi.protege.collab - Collaborative Protege
> > CONFIG: Loaded plugin edu.stanford.smi.protege.script - Script Plugin
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.standard_extensions - 
> > Graph Widget, Table Widget
> > CONFIG: Loaded plugin edu.stanford.smi.protege.stringsearch - String 
> > Search Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.datamaster - DataMaster Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.facets_tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.instance_tree
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.owl.inference.pellet 
> > - Protege Pellet Reasoner
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT
> >  Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab
> > CONFIG: Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab
> > CONFIG: Loaded plugin org.algernon - Algernon
> > CONFIG: Loaded plugin se.liu.ida.JessTab - JessTab Plugin
> > CONFIG: Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.debugger
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owldoc
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab
> > CONFIG: Loaded
> >  plugin uk.ac.man.cs.mig.coode.owlviz
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic Wizards
> > CONFIG: Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL Wizards
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\Error.owl) --
> >  LocalFolderRepository.update()
> > INFO: Loading triples
> > INFO: Start processing ontology: 
> > http://localhost:9999/ontology/MalfunctionRule.owl Time: Fri Dec 28 
> > 01:32:56 CST 2007
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrlx.owl)
> > INFO: [ProtegeOWLParser] Importing http://localhost:9999/ontology/Error.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.owl (from
> >  c:\protege\3\plugins\edu.stanford.smi.protegex.owl\sqwrl.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/3.3/swrla.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrla.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrlm.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\tbox.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\abox.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\temporal.owl)
> > INFO: [ProtegeOWLParser] Completed triple loading after 632 ms
> > INFO: [TripleChangePostProcessor] Completed lists after 0 ms
> > INFO: [TripleChangePostProcessor] Completed anonymous classes after 2 ms
> > INFO: [TripleChangePostProcessor] Completed deprecated classes after 5 ms
> > INFO: [TripleChangePostProcessor] Completed properties after 10 ms
> > INFO: [TripleChangePostProcessor] Completed named classes after 6 ms
> > INFO: ... Loading completed
> >  after 765 ms
> > Rule engine
> >  'SWRLJessBridge' registered with the SWRLTab bridge.
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\Device.owl) -- LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\StateMachine.owl) -- 
> > LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\Hardware.owl) -- LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\SoftwarePlatform.owl) -- 
> > LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\OperatingSystem.owl) -- 
> > LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\Java.owl) -- LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a directory.
> >  (\ontology\DotNet.owl) -- LocalFolderRepository.update()
> > WARNING: [Local Folder Repository] The specified file must be a 
> > directory. (\ontology\Error.owl) -- LocalFolderRepository.update()
> > INFO: Loading triples
> > INFO: Start processing ontology: 
> > http://localhost:9999/ontology/DeviceRule_Pig.owl Time: Fri Dec 28 
> > 01:32:58 CST 2007
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/3.3/swrla.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrla.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/tbox.owl (from
> >  c:\protege\3\plugins\edu.stanford.smi.protegex.owl\tbox.owl)
> > INFO:
> >  [ProtegeOWLParser] Importing 
> > http://sqwrl.stanford.edu/ontologies/built-ins/3.4/sqwrl.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\sqwrl.owl)
> > INFO: [ProtegeOWLParser] Importing http://www.w3.org/2003/11/swrlb 
> > (from c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrlb.owl)
> > INFO: [ProtegeOWLParser] Importing http://www.w3.org/2003/11/swrl 
> > (from c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrl.owl)
> > WARNING: [ProtegeOWLParser] Warning: Ignoring namespace prefix 
> > "ruleml" for existing prefix "swrl" -- 
> > DefaultProtegeOWLParserLogger.logWarning()
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/temporal.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\temporal.owl)
> > INFO: [ProtegeOWLParser] Importing http://localhost:9999/ontology/Device.owl
> > WARNING: [ProtegeOWLParser] Warning: Ignoring namespace prefix "p1" 
> > for existing prefix "statemachine" -- 
> > DefaultProtegeOWLParserLogger.logWarning()
> > INFO: [ProtegeOWLParser] Importing http://localhost:9999/ontology/Error.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://localhost:9999/ontology/SoftwarePlatform.owl
> > INFO: [ProtegeOWLParser]
> >  Importing http://localhost:9999/ontology/DotNet.owl
> > INFO: [ProtegeOWLParser] Importing http://localhost:9999/ontology/Java.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://localhost:9999/ontology/OperatingSystem.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://localhost:9999/ontology/Hardware.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://localhost:9999/ontology/StateMachine.owl
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/abox.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\abox.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.3/swrlx.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrlx.owl)
> > INFO: [ProtegeOWLParser] Importing 
> > http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.owl (from 
> > c:\protege\3\plugins\edu.stanford.smi.protegex.owl\swrlm.owl)
> > Exception in thread "main" java.lang.OutOfMemoryError: Java heap space
> >     at java.util.HashMap.<init>(HashMap.java:187)
> >     at
> >  java.util.HashMap.<init>(HashMap.java:199)
> >     at java.util.LinkedHashMap.<init>(LinkedHashMap.java:172)
> >     at 
> > edu.stanford.smi.protege.model.framestore.InMemoryFrameDb.<init>(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.triplestore.JenaTripleStoreModel.createTripleStore(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.runImport(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.processImports(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.loadTriples(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.run(Unknown 
> > Source)
> >     at 
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.run(Unknown 
> > Source)
> >     at
> >  
> > edu.stanford.smi.protegex.owl.jena.parser.ProtegeOWLParser.run(Unknown 
> > Source)
> >     at edu.stanford.smi.protegex.owl.jena.JenaOWLModel.load(Unknown Source)
> >     at 
> > edu.stanford.smi.protegex.owl.ProtegeOWL.createJenaOWLModelFromURI(Unknown 
> > Source)
> >     at 
> > com.eu.hydra.flamenco.ruleprocessing.RuleProcessing.loadOWL(RuleProcessing.java:83)
> >     at 
> > com.eu.hydra.flamenco.ruleprocessing.RuleProcessing.<init>(RuleProcessing.java:43)
> >     at 
> > com.eu.hydra.flamenco.systemdiagnosis.PigSystemRule.<init>(PigSystemRule.java:32)
> >     at 
> > com.eu.hydra.flamenco.systemdiagnosis.PigSystemRule.main(PigSystemRule.java:55)
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >       
> > ____________________________________________________________________________________
> > Looking for last minute shopping deals?
> > Find them fast with Yahoo! Search.  
> > http://tools.search.yahoo.com/newsearch/category.php?category=shopping
> 
> 
> 
> 
> 
> ------------------------------
> 
> Message: 2
> Date: Fri, 28 Dec 2007 13:41:57 -0800
> From: Martin O'Connor <martin.oconnor at stanford.edu>
> Subject: Re: [protege-owl] Exception on SWRL Query (correction)
> To: Ely Edison Matos <ely.matos at ufjf.edu.br>, 	User support for the
> 	Protege-OWL editor <protege-owl at lists.stanford.edu>
> Message-ID: <47756DA5.8030101 at stanford.edu>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
> 
> 
> Have you run the ontology through the OWL validator [1] to determine 
> that it is valid OWL DL? Exceptions like these are often caused by OWL 
> Full constructs in the OWL file. Send me the OWL files if you cannot 
> find the source of the problem.
> 
> Martin
> 
> [1] http://www.mygrid.org.uk/OWL/Validator
> 
> Ely Edison Matos wrote:
> 
> >Correcting the rule:
> > Hello,
> > I'm trying to run a simple SWRL query (Protege 3.4 build 122)
> >
> > imp:Unit(?x) -> sqwrl:select(?x)
> >
> > where imp: is a ontology with Named Classes (like Unit) imported by the
> > current ontology (which has Individuals from Unit). Nothing happens at GUI
> > and at log window I have a Warning (below).
> >
> > Some light on this? Are there some problem on use SWRL Query with imported
> > ontologies?
> >
> > Thanks,
> > Ely
> >
> >
> > WARNING: Exception caught by default exception handler -- 
> > java.lang.ClassCastException:
> >edu.stanford.smi.protegex.owl.model.impl.DefaultOWLUnionClass cannot  be
> >cast to edu.stanford.smi.protegex.owl.model.RDFSNamedClass          at
> >
> >edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.getRDFSNamedClass(
> >Unknown Source)  at
> >edu.stanford.smi.protegex.owl.swrl.util.SWRLOWLUtil.getRDFSNamedClass
> > (Unknown Source)  at
> >edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importOWLClass(Unknown Source)         at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importOWLClasses(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importOWLPropertyAssertionAxioms(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importOWLPropertyAssertionAxioms(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importSWRLRulesAndOWLKnowledge(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.importSWRLRulesAndOWLKnowledge(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.bridge.impl.AbstractSWRLRuleEngine
> > Bridge.runSQWRLQueries(Unknown Source)          at
> > edu.stanford.smi.protegex.owl.swrl.sqwrl.ui.SQWRLQueryControlPanel$Ru
> > nActionListener.actionPerformed(Unknown Source)          at
> > javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1995)
> >at
> >
> >javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2318)
> >at
> > javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel
> >.java:387)          at
> > javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242  )
> >at
> >
> >javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener
> >.java:236)         at
> > java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:272)
> >at java.awt.Component.processMouseEvent(Component.java:6100)         at
> >javax.swing.JComponent.processMouseEvent(JComponent.java:3265)         at
> >java.awt.Component.processEvent(Component.java:5865)          at
> >java.awt.Container.processEvent(Container.java:2058)          at
> >java.awt.Component.dispatchEventImpl(Component.java:4472)
> >         at java.awt.Container.dispatchEventImpl(Container.java:2116)
> >at java.awt.Component.dispatchEvent(Component.java:4302)          at
> > java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4322 )
> >at
> > java.awt.LightweightDispatcher.processMouseEvent(Container.java:3986)
> >         at
> >java.awt.LightweightDispatcher.dispatchEvent(Container.java:3916)
> >         at java.awt.Container.dispatchEventImpl(Container.java:2102)
> >         at java.awt.Window.dispatchEventImpl(Window.java:2440)
> >         at java.awt.Component.dispatchEvent(Component.java:4302)
> >         at java.awt.EventQueue.dispatchEvent(EventQueue.java:599)
> >at
> >
> >java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java
> >:273)         at
> > java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.
> >java:183)      at
> >
> >java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java
> >:173)          at
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:168)
> >at
> > java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:160)
> >at java.awt.EventDispatchThread.run(EventDispatchThread.java:121)
> >
> >_______________________________________________
> >protege-owl mailing list
> >protege-owl at lists.stanford.edu
> >https://mailman.stanford.edu/mailman/listinfo/protege-owl
> >
> >Instructions for unsubscribing: http://protege.stanford.edu/doc/faq.html#01a.03 
> >
> >  
> >
> 
> 
> 
> ------------------------------
> 
> Message: 3
> Date: Sat, 29 Dec 2007 00:36:48 -0300
> From: "Ely Edison Matos" <ely.matos at ufjf.edu.br>
> Subject: [protege-owl] SWRL owl files not found
> To: <protege-owl at lists.stanford.edu>
> Message-ID: <00bd01c849cc$0c188a30$0300a8c0 at illusions>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> Hello,
> I'm using SWRLJessBridge over a example created with Protege 3.4 build 122 and I'm finding:
> 
> SEVERE: Exception caught -- java.io.FileNotFoundException: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlxml.owl
> 
> SEVERE: Exception caught -- java.io.FileNotFoundException: http://swrl.stanford.edu/ontologies/built-ins/3.4/swrlm.owl
> 
> In spite of this messages, the rules are firing with Jess.
> Browsing web address, I found that swrlxml.owl is stored as SWRLXML.OWL and swrlm.owl is in the 3.3 directory...Just a warning, I don?t know the consequences yet.
> 
> Ah, both the files are in the protege.owl plugin directory, then I don't know if the messages are showed with Protege Editor.
> 
> Ely
> 
> 
> 
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> 
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> protege-owl at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/protege-owl
> 
> 
> End of protege-owl Digest, Vol 17, Issue 121
> ********************************************

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