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[protege-owl] obo-owl-protege

Allyson Lister a.l.lister at newcastle.ac.uk
Wed Jan 23 06:35:49 PST 2008


Hi Matthew,

Thanks for the information.

:) Allyson

On Jan 23, 2008 2:09 PM, Matthew Horridge <matthew.horridge at cs.man.ac.uk>
wrote:

> Hi Allyson,
>
> The syntax and semantics mapping used by the OWL API parser (used in
> Protege 4) can be found here:
>
> http://www.cs.man.ac.uk/~horrocks/obo/<http://www.cs.man.ac.uk/%7Ehorrocks/obo/>
>
> This isn't the same mapping that is used in Protege 3.  I believe that
> the only real difference between the mapping above and the mapping
> used in Protege 3 is how annotations are mapped into OWL.
>
> Cheers,
>
> Matthew
>
> On 23 Jan 2008, at 13:55, Allyson Lister wrote:
>
> > Hi all,
> >
> > Just a quick follow-up to this. I had the idea that both of the
> > protege 3 plugins and the protege 4 ability to convert obo -> owl
> > used the same method for conversion, so you shouldn't get different
> > files with each result.
> >
> > Is this correct? Is there somewhere that this is documented?
> >
> > thanks!
> >
> > Allyson
> >
> > On Dec 12, 2007 8:30 PM, Tania Tudorache <tudorache at stanford.edu >
> > wrote:
> > Victor,
> >
> > In case you want to try other converters as well, there are two tab
> > plugins in Protege 3 that do the OBO->OWL conversion:
> >
> > The OBO converter:
> > http://protege.cim3.net/cgi-bin/wiki.pl?OBOConverter
> >
> > And the OBO Import Tab:
> > http://faculty.washington.edu/gennari/Protege-plugins/OBO-import/
> >
> > Tania
> >
> >
> >
> > Victor Manuel wrote:
> > >
> > >
> > > How can I load an OBO file in Protege? I read a paper in which the
> > > authors say it is possible to do it in Protege 4 but I have not been
> > > able to find such option. How can I do it? Thanks in advance,
> > cheers.
> > >
> > >
> > ------------------------------------------------------------------------
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> > Try
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> > >
> > >
> > >
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> >
> > --
> > Thanks,
> > Allyson :)
> >
> > Allyson Lister
> > Research Associate
> > Centre for Integrated Systems Biology for Ageing and Nutrition
> > Newcastle University
> > http://www.cisban.ac.uk
> > School of Computing Science
> > Newcastle University
> > Newcastle upon Tyne, NE1 7RU
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-- 
Thanks,
Allyson :)

Allyson Lister
Research Associate
Centre for Integrated Systems Biology for Ageing and Nutrition
Newcastle University
http://www.cisban.ac.uk
School of Computing Science
Newcastle University
Newcastle upon Tyne, NE1 7RU
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