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[protege-owl] ERROR -> The wizard transaction failed for Create multiple subclasses

Gray, Trevor tgray at globalspec.com
Wed Apr 14 06:56:27 PDT 2010


 

I was running the "create subclasses wizard" and received the following
errors, which bid me to forward the messages to this list.  I thought
I'd include the entire session since it was the first thing I did.  I
was connected to a server running on another machine on our LAN. 

 

-----------------------------------

 

cwd: C:\Program Files\Protege_3.4.3

cmd: "C:\Program Files\Protege_3.4.3\jre\bin\java.exe" -Xms262144000
-Xmx524288000 -classpath "C:\Program
Files\Protege_3.4.3\protege.jar;C:\Program
Files\Protege_3.4.3\looks.jar;C:\Program
Files\Protege_3.4.3\unicode_panel.jar;C:\Program
Files\Protege_3.4.3\driver.jar;C:\Program
Files\Protege_3.4.3\driver0.jar;C:\Program
Files\Protege_3.4.3\driver1.jar;C:\Program
Files\Protege_3.4.3\driver2.jar$;C:\Program
Files\Protege_3.4.3\lax.jar;" com.zerog.lax.LAX "C:/Program
Files/Protege_3.4.3/Protege.lax" "C:/Documents and
Settings/<username>/Local Settings/Temp/lax590E.tmp"

Protege 3.4.3 Build 572, JVM 1.5.0_11-b03, memory=520M, Windows XP,
encoding=UTF-8, language=en, country=US

Loaded plugin edu.stanford.smi.protegex.owl - OWL Plugin

Loaded plugin ca.uvic.cs.chisel.jambalaya - Jambalaya

Loaded plugin dfki.protege.ontoviz

Loaded plugin edu.stanford.smi.protegex.standard_extensions - Graph
Widget, Table Widget

Loaded plugin edu.stanford.bmir.protegex.bp.ref - BioPortal Reference
Plugin

Loaded plugin edu.stanford.smi.protegex.rdf_backend - RDF Backend

Loaded plugin edu.stanford.smi.protegex.changes - Changes tab

Loaded plugin edu.stanford.smi.protegex.chatPlugin - Chat

Loaded plugin edu.stanford.smi.protege.collab - Collaborative Protege

Loaded plugin edu.stanford.smi.protege.script - Script Plugin

Loaded plugin edu.stanford.smi.protege.stringsearch - String Search Tab

Loaded plugin edu.stanford.smi.protegex.datamaster - DataMaster Tab

Loaded plugin edu.stanford.smi.protegex.pal_tabs - PAL Tabs

Loaded plugin edu.stanford.smi.protegex.ezpal - EZPal Tab

Loaded plugin edu.stanford.smi.protegex.facets_tab

Loaded plugin edu.stanford.smi.protegex.instance_tree

Loaded plugin edu.stanford.smi.protegex.prompt - PROMPT Tab

Loaded plugin edu.stanford.smi.protegex.metaanalysis - MetaAnalysis Tab

Loaded plugin edu.stanford.smi.protegex.owl.inference.pellet - Protege
Pellet Reasoner

Loaded plugin edu.stanford.smi.protegex.query.lucene - LuceneQueryTab

Loaded plugin edu.stanford.smi.protegex.umls_tab - UMLS Tab

Loaded plugin edu.stanford.smi.protegex.wordnet - WordNet Tab

Loaded plugin edu.stanford.smi.protegex.xml_tab - XML Tab

Loaded plugin org.algernon - Algernon

Loaded plugin org.protege.owl.axiome - Axiome Plugin

Loaded plugin org.protege.owl.mappingmaster - MappingMaster Plugin

Loaded plugin se.liu.ida.JessTab - JessTab Plugin

Loaded plugin uk.ac.iam.soton.akt.tgviztab - TGVizTab

Loaded plugin uk.ac.man.cs.mig.coode.debugger

Loaded plugin uk.ac.man.cs.mig.coode.manchesterowlsyntaxeditor

Loaded plugin uk.ac.man.cs.mig.coode.owldoc

Loaded plugin uk.ac.man.cs.mig.coode.owlindividualstab

Loaded plugin uk.ac.man.cs.mig.coode.owlviz

Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard - Basic Wizards

Loaded plugin uk.ac.man.cs.mig.coode.protege.wizard.owl - OWL Wizards

Preloading frame values: OWLDatabaseModel(KB_808291)

Preloading frame values: DefaultKnowledgeBase(KB_615401)

Started Collaborative Protege on Wed Apr 14 09:23:28 EDT 2010

Preloading frame values: DefaultKnowledgeBase(KB_867750)

Preloading frame values: DefaultKnowledgeBase(KB_659642)

UI display time = 10 sec

ERROR -> The wizard transaction failed for Create multiple subclasses

ERROR ->
edu.stanford.smi.protege.model.framestore.ImmutableNamesNarrowFrameStore
.setValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.SimpleFrameStore.setDirectOwnS
lotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameS
tore.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.EventGeneratorFrameStore.setDi
rectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore.setDir
ectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore.set
DirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore.setDir
ectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.cleandispatch.DefaultDispatch.
setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFra
meStore.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.TypeUpdateFrameStore.setD
irectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.RangeUpdateFrameStore.set
DirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.DomainUpdateFrameStore.se
tDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.DuplicateValuesFrameStore
.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.OWLFrameStore.setDirectOw
nSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR -> sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)

ERROR -> sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

ERROR -> java.lang.reflect.Method.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.LastUsageInvocationHandler.ha
ndleInvoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR -> $Proxy0.setDirectOwnSlotValues(Unknown Source)

ERROR -> sun.reflect.GeneratedMethodAccessor6.invoke(Unknown Source)

ERROR -> sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

ERROR -> java.lang.reflect.Method.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.LocalizeFrameStoreHandler.han
dleInvoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.AbstractFrameStoreInvocationHa
ndler.invoke(Unknown Source)

ERROR -> $Proxy0.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.ServerFrameStore.setDirectOwn
SlotValues(Unknown Source)

ERROR -> sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

ERROR -> sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

ERROR -> sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

ERROR -> java.lang.reflect.Method.invoke(Unknown Source)

ERROR -> sun.rmi.server.UnicastServerRef.dispatch(Unknown Source)

ERROR -> sun.rmi.transport.Transport$1.run(Unknown Source)

ERROR -> java.security.AccessController.doPrivileged(Native Method)

ERROR -> sun.rmi.transport.Transport.serviceCall(Unknown Source)

ERROR -> sun.rmi.transport.tcp.TCPTransport.handleMessages(Unknown
Source)

ERROR ->
sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(Unknown Source)

ERROR -> java.lang.Thread.run(Unknown Source)

ERROR ->
sun.rmi.transport.StreamRemoteCall.exceptionReceivedFromServer(UnknownSo
urce)

ERROR -> sun.rmi.transport.StreamRemoteCall.executeCall(Unknown Source)

ERROR -> sun.rmi.server.UnicastRef.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.ServerFrameStore_Stub.setDire
ctOwnSlotValues(Unknown Source)

ERROR -> sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

ERROR -> sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)

ERROR -> sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)

ERROR -> java.lang.reflect.Method.invoke(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore$2.invo
ke(Unknown Source)

ERROR -> $Proxy1.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.server.framestore.RemoteClientFrameStore.setDir
ectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.framestore.LocalClassificationFrameS
tore.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.EventDispatchFrameStore.setDir
ectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.ArgumentCheckingFrameStore.set
DirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.ChangeMonitorFrameStore.setDir
ectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.cleandispatch.DefaultDispatch.
setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.cleandispatch.CleanDispatchFra
meStore.setDirectOwnSlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.framestore.FrameStoreAdapter.setDirectOwn
SlotValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.DefaultKnowledgeBase.setDirectOwnSlotValu
es(Unknown Source)

ERROR ->
edu.stanford.smi.protegex.owl.model.impl.AbstractOWLModel.setDirectOwnSl
otValues(Unknown Source)

ERROR ->
edu.stanford.smi.protege.model.DefaultFrame.setDirectOwnSlotValues(Unkno
wn Source)

ERROR ->
edu.stanford.smi.protege.model.DefaultFrame.setDirectOwnSlotValue(Unknow
n Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.util.KbHelper.createClassUsingBrow
serSlot(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.util.KbHelper.createClass(Unknown
Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.util.KbHelper.createSubclasses(Unk
nown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.basic.wizards.EnterSubclassesWizar
d.handleFinished(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.owl.wizards.impl.OWLSubclassesWiza
rd.handleFinished(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.SimpleAbstractWizard.doFini
sh(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.AbstractWizard$SpecialBehav
iourAdapter.finishPressed(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardDialog.fireFinishButt
onPressedEvent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardDialog.nextButtonPres
sed(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardDialog$2.actionPerfor
med(Unknown Source)

ERROR -> javax.swing.AbstractButton.fireActionPerformed(Unknown Source)

ERROR -> javax.swing.AbstractButton$Handler.actionPerformed(Unknown
Source)

ERROR -> javax.swing.DefaultButtonModel.fireActionPerformed(Unknown
Source)

ERROR -> javax.swing.DefaultButtonModel.setPressed(Unknown Source)

ERROR ->
javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source)

ERROR -> java.awt.Component.processMouseEvent(Unknown Source)

ERROR -> javax.swing.JComponent.processMouseEvent(Unknown Source)

ERROR -> java.awt.Component.processEvent(Unknown Source)

ERROR -> java.awt.Container.processEvent(Unknown Source)

ERROR -> java.awt.Component.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Container.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Component.dispatchEvent(Unknown Source)

ERROR -> java.awt.LightweightDispatcher.retargetMouseEvent(Unknown
Source)

ERROR -> java.awt.LightweightDispatcher.processMouseEvent(Unknown
Source)

ERROR -> java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)

ERROR -> java.awt.Container.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Window.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Component.dispatchEvent(Unknown Source)

ERROR -> java.awt.EventQueue.dispatchEvent(Unknown Source)

ERROR -> java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown
Source)

ERROR -> java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown
Source)

ERROR -> java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown
Source)

ERROR -> java.awt.Dialog$1.run(Unknown Source)

ERROR -> java.awt.Dialog$2.run(Unknown Source)

ERROR -> java.security.AccessController.doPrivileged(Native Method)

ERROR -> java.awt.Dialog.show(Unknown Source)

ERROR -> java.awt.Component.show(Unknown Source)

ERROR -> java.awt.Component.setVisible(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardDialog.showWizard(Unk
nown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.SimpleAbstractWizard.showWi
zard(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.handleEv
ent(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.WizardStateMachine.sendEven
t(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.wizard.SimpleAbstractWizard.showMo
dalDialog(Unknown Source)

ERROR ->
uk.ac.man.cs.mig.coode.protege.wizard.owl.AbstractLaunchWizardFrameActio
n.actionPerformed(Unknown Source)

ERROR -> javax.swing.AbstractButton.fireActionPerformed(Unknown Source)

ERROR -> javax.swing.AbstractButton$Handler.actionPerformed(Unknown
Source)

ERROR -> javax.swing.DefaultButtonModel.fireActionPerformed(Unknown
Source)

ERROR -> javax.swing.DefaultButtonModel.setPressed(Unknown Source)

ERROR -> javax.swing.AbstractButton.doClick(Unknown Source)

ERROR -> javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)

ERROR ->
javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown
Source)

ERROR -> java.awt.Component.processMouseEvent(Unknown Source)

ERROR -> javax.swing.JComponent.processMouseEvent(Unknown Source)

ERROR -> java.awt.Component.processEvent(Unknown Source)

ERROR -> java.awt.Container.processEvent(Unknown Source)

ERROR -> java.awt.Component.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Container.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Component.dispatchEvent(Unknown Source)

ERROR -> java.awt.LightweightDispatcher.retargetMouseEvent(Unknown
Source)

ERROR -> java.awt.LightweightDispatcher.processMouseEvent(Unknown
Source)

ERROR -> java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)

ERROR -> java.awt.Container.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Window.dispatchEventImpl(Unknown Source)

ERROR -> java.awt.Component.dispatchEvent(Unknown Source)

ERROR -> java.awt.EventQueue.dispatchEvent(Unknown Source)

ERROR -> java.awt.EventDispatchThread.pumpOneEventForHierarchy(Unknown
Source)

ERROR -> java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown
Source)

ERROR -> java.awt.EventDispatchThread.pumpEvents(Unknown Source)

ERROR -> java.awt.EventDispatchThread.pumpEvents(Unknown Source)

ERROR -> java.awt.EventDispatchThread.run(Unknown Source)

ERROR -> The wizard failed to complete

ERROR -> please report this to protege-owl at lists.stanford.edu

ERROR -> Transaction handling failed

 

-----------------------------------

 

Hope this helps troubleshoot the issue.

 

Regards,

-Trevor Gray

 

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