Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[protege-owl] OBO loading error

Alexander Garcia Castro alexgarciac at gmail.com
Fri Apr 16 12:50:58 PDT 2010


I have P4 4.1, I am trying to open an OBO file, the SO ontology -downloaded
from the Sequence Ontology website. I am getting :

Server returned HTTP response code: 503 for URL:
http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd


Full Stack Trace
-----------------------------------------------------------------------------------------

org.semanticweb.owlapi.io.OWLOntologyCreationIOException: Server returned
HTTP response code: 503 for URL:
http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd
    at
uk.ac.manchester.cs.owl.owlapi.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:173)
    at
uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:632)
    at
uk.ac.manchester.cs.owl.owlapi.OWLOntologyManagerImpl.loadOntologyFromOntologyDocument(OWLOntologyManagerImpl.java:590)
    at
org.protege.editor.owl.model.OWLModelManagerImpl.loadOntologyFromPhysicalURI(OWLModelManagerImpl.java:313)
    at
org.protege.editor.owl.OWLEditorKit.handleLoadFrom(OWLEditorKit.java:152)
    at
org.protege.editor.owl.OWLEditorKit.handleLoadRequest(OWLEditorKit.java:146)
    at
org.protege.editor.core.ui.action.OpenAction.openInCurrentWorkspace(OpenAction.java:65)
    at org.protege.editor.core.ui.util.UIUtil.openRequest(UIUtil.java:223)
    at
org.protege.editor.core.ui.action.OpenAction.actionPerformed(OpenAction.java:33)
    at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
    at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
    at javax.swing.DefaultButtonModel.setPressed(Unknown Source)
    at javax.swing.AbstractButton.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI.doClick(Unknown Source)
    at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(Unknown
Source)
    at java.awt.AWTEventMulticaster.mouseReleased(Unknown Source)
    at java.awt.Component.processMouseEvent(Unknown Source)
    at javax.swing.JComponent.processMouseEvent(Unknown Source)
    at java.awt.Component.processEvent(Unknown Source)
    at java.awt.Container.processEvent(Unknown Source)
    at java.awt.Component.dispatchEventImpl(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
    at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
    at java.awt.Container.dispatchEventImpl(Unknown Source)
    at java.awt.Window.dispatchEventImpl(Unknown Source)
    at java.awt.Component.dispatchEvent(Unknown Source)
    at java.awt.EventQueue.dispatchEvent(Unknown Source)
    at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
    at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
    at java.awt.EventDispatchThread.run(Unknown Source)
Caused by: java.io.IOException: Server returned HTTP response code: 503 for
URL: http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd
    at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLEntityManager.setupCurrentEntity(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLEntityManager.startEntity(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLEntityManager.startDTDEntity(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDTDScannerImpl.setInputSource(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.dispatch(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$DTDDriver.next(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$PrologDriver.next(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.next(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(Unknown
Source)
    at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(Unknown
Source)
    at
com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(Unknown
Source)
    at javax.xml.parsers.SAXParser.parse(Unknown Source)
    at org.semanticweb.owlapi.rdf.syntax.RDFParser.parse(RDFParser.java:139)
    at
org.coode.owlapi.rdfxml.parser.RDFXMLParser.parse(RDFXMLParser.java:88)
    at
uk.ac.manchester.cs.owl.owlapi.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:165)
    ... 36 more


Why? how can I open OBO files in P4.1 ?

-- 
Alexander Garcia
http://www.alexandergarcia.name/
http://www.usefilm.com/photographer/75943.html
http://www.linkedin.com/in/alexgarciac
Postal address:
Alexander Garcia, Tel.: +49 421 218 64211
Universität Bremen
Enrique-Schmidt-Str. 5
D-28359 Bremen
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/protege-owl/attachments/20100416/895ea1ca/attachment.html>


More information about the protege-owl mailing list